# Poecilia mexicana genome, 801.711 Mbp of sequence in 18105 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 142987 178.35 5606 Acc65I GGTACC 79907 99.67 10033 AccI GTMKAC 460340 574.20 1741 AciI CCGC 2873572 3584.30 278 AclI AACGTT 258236 322.11 3104 AcuI CTGAAG 1248364 1557.12 642 AfeI AGCGCT 168796 210.54 4749 AflII CTTAAG 257618 321.34 3112 AflIII ACRYGT 994759 1240.79 805 AgeI ACCGGT 84563 105.48 9480 AluI AGCT 6643396 8286.52 120 AlwI GGATC 1475565 1840.52 543 ApaI GGGCCC 97865 122.07 8192 ApaLI GTGCAC 211307 263.57 3794 ApeKI GCWGC 3800386 4740.34 210 ApoI RAATTY 2520200 3143.52 318 AscI GGCGCGCC 1855 2.31 432189 AseI ATTAAT 884363 1103.09 906 AsiSI GCGATCGC 985 1.23 813920 AvaI CYCGRG 285503 356.12 2808 AvaII GGWCC 1163339 1451.07 689 AvrII CCTAGG 48152 60.06 16649 BaeGI GKGCMC 505385 630.38 1586 BamHI GGATCC 163611 204.08 4900 BanI GGYRCC 428339 534.28 1871 BanII GRGCYC 665640 830.27 1204 BbvI GCAGC 3800386 4740.34 210 BccI CCATC 2459700 3068.06 325 BceAI ACGGC 919176 1146.52 872 BciVI GTATCC 229001 285.64 3500 BclI TGATCA 462497 576.89 1733 BcoDI GTCTC 2190753 2732.60 365 BfuAI ACCTGC 734651 916.35 1091 BfuCI GATC 3371213 4205.02 237 BglII AGATCT 350289 436.93 2288 BlpI GCTNAGC 302240 376.99 2652 BmrI ACTGGG 520402 649.11 1540 BmtI GCTAGC 162203 202.32 4942 BpmI CTGGAG 1044225 1302.49 767 BpuEI CTTGAG 541410 675.32 1480 BsaAI YACGTR 354925 442.71 2258 BsaHI GRCGYC 431612 538.36 1857 BsaI GGTCTC 369662 461.09 2168 BsaWI WCCGGW 371378 463.23 2158 BseRI GAGGAG 1135520 1416.37 706 BsgI GTGCAG 854108 1065.36 938 BsiEI CGRYCG 188210 234.76 4259 BsiHKAI GWGCWC 930762 1160.97 861 BsiWI CGTACG 32932 41.08 24344 BsmAI GTCTC 2190753 2732.60 365 BsmBI CGTCTC 410110 511.54 1954 BsmFI GGGAC 1179181 1470.83 679 BsmI GAATGC 526847 657.15 1521 BsoBI CYCGRG 285503 356.12 2808 Bsp1286I GDGCHC 1497039 1867.30 535 BspCNI CTCAG 3348202 4176.32 239 BspDI ATCGAT 127336 158.83 6296 BspEI TCCGGA 75275 93.89 10650 BspHI TCATGA 466859 582.33 1717 BspMI ACCTGC 734651 916.35 1091 BspQI GCTCTTC 185378 231.23 4324 BsrBI CCGCTC 266930 332.95 3003 BsrFI RCCGGY 349393 435.81 2294 BsrGI TGTACA 441983 551.30 1813 BsrI ACTGG 2597473 3239.91 308 BssHII GCGCGC 56205 70.11 14264 BssSI CACGAG 184034 229.55 4356 BstBI TTCGAA 84091 104.89 9533 BstEII GGTNACC 160214 199.84 5004 BstNI CCWGG 2224786 2775.05 360 BstUI CGCG 594074 741.01 1349 BstYI RGATCY 985117 1228.77 813 BstZ17I GTATAC 100843 125.78 7950 Bsu36I CCTNAGG 200268 249.80 4003 BtgI CCRYGG 441417 550.59 1816 BtgZI GCGATG 211545 263.87 3789 BtsCI GGATG 2472101 3083.53 324 ClaI ATCGAT 127336 158.83 6296 CviAII CATG 5993732 7476.17 133 CviKI-1 RGCY 16196466 20202.36 49 CviQI GTAC 2403953 2998.53 333 DdeI CTNAG 4850987 6050.79 165 DpnII GATC 3371213 4205.02 237 DraI TTTAAA 2031340 2533.75 394 EaeI YGGCCR 542840 677.10 1476 EagI CGGCCG 67818 84.59 11821 EarI CTCTTC 924514 1153.18 867 EciI GGCGGA 218035 271.96 3676 Eco53kI GAGCTC 295576 368.68 2712 EcoO109I RGGNCCY 480010 598.73 1670 EcoRI GAATTC 221460 276.23 3620 EcoRV GATATC 173481 216.39 4621 FatI CATG 5993732 7476.17 133 FauI CCCGC 603724 753.04 1327 Fnu4HI GCNGC 4579537 5712.20 175 FokI GGATG 2472101 3083.53 324 FseI GGCCGGCC 3515 4.38 228082 FspI TGCGCA 111633 139.24 7181 HaeII RGCGCY 498757 622.12 1607 HaeIII GGCC 2345480 2925.59 341 HgaI GACGC 820444 1023.37 977 HhaI GCGC 1375366 1715.54 582 HincII GTYRAC 834839 1041.32 960 HindIII AAGCTT 488985 609.93 1639 HinfI GANTC 3842384 4792.73 208 HinP1I GCGC 1375366 1715.54 582 HpaI GTTAAC 241834 301.65 3315 HpaII CCGG 1344848 1677.47 596 HphI GGTGA 2348770 2929.69 341 Hpy188I TCNGA 5665299 7066.51 141 Hpy99I CGWCG 449594 560.79 1783 HpyAV CCTTC 2555574 3187.65 313 HpyCH4III ACNGT 4620135 5762.84 173 HpyCH4IV ACGT 2222660 2772.39 360 HpyCH4V TGCA 8011468 9992.96 100 KasI GGCGCC 86833 108.31 9232 KpnI GGTACC 79907 99.67 10033 MboI GATC 3371213 4205.02 237 MboII GAAGA 3806931 4748.50 210 MfeI CAATTG 242359 302.30 3307 MluCI AATT 9680552 12074.86 82 MluI ACGCGT 42170 52.60 19011 MlyI GAGTC 1821854 2272.46 440 MmeI TCCRAC 924586 1153.27 867 MnlI CCTC 9531149 11888.50 84 MscI TGGCCA 265040 330.59 3024 MseI TTAA 11219793 13994.80 71 MspA1I CMGCKG 1251617 1561.18 640 MspI CCGG 1344848 1677.47 596 NaeI GCCGGC 90905 113.39 8819 NarI GGCGCC 86833 108.31 9232 NciI CCSGG 600986 749.63 1333 NcoI CCATGG 209943 261.87 3818 NdeI CATATG 292503 364.85 2740 NgoMIV GCCGGC 90905 113.39 8819 NheI GCTAGC 162203 202.32 4942 NlaIII CATG 5993732 7476.17 133 NmeAIII GCCGAG 228382 284.87 3510 NotI GCGGCCGC 3106 3.87 258117 NruI TCGCGA 20545 25.63 39022 NsiI ATGCAT 557354 695.21 1438 NspI RCATGY 1727333 2154.56 464 PacI TTAATTAA 52489 65.47 15273 PaeR7I CTCGAG 78697 98.16 10187 PciI ACATGT 624509 778.97 1283 PleI GAGTC 1821854 2272.46 440 PluTI GGCGCC 86833 108.31 9232 PmeI GTTTAAAC 23709 29.57 33814 PmlI CACGTG 111127 138.61 7214 PpuMI RGGWCCY 258803 322.81 3097 PsiI TTATAA 691556 862.60 1159 PspGI CCWGG 2224786 2775.05 360 PspOMI GGGCCC 97865 122.07 8192 PspXI VCTCGAGB 23420 29.21 34231 PstI CTGCAG 1000392 1247.82 801 PvuI CGATCG 35128 43.82 22822 PvuII CAGCTG 836368 1043.23 958 RsaI GTAC 2403953 2998.53 333 RsrII CGGWCCG 37682 47.00 21275 SacI GAGCTC 295576 368.68 2712 SacII CCGCGG 49770 62.08 16108 SalI GTCGAC 79467 99.12 10088 SapI GCTCTTC 185378 231.23 4324 Sau3AI GATC 3371213 4205.02 237 Sau96I GGNCC 2135864 2664.13 375 SbfI CCTGCAGG 27686 34.53 28957 ScaI AGTACT 207915 259.34 3855 ScrFI CCNGG 2825772 3524.67 283 SexAI ACCWGGT 160038 199.62 5009 SfaNI GCATC 2151804 2684.01 372 SfcI CTRYAG 1812647 2260.97 442 SfoI GGCGCC 86833 108.31 9232 SgrAI CRCCGGYG 10960 13.67 73148 SmaI CCCGGG 61370 76.55 13063 SmlI CTYRAG 877725 1094.81 913 SnaBI TACGTA 76874 95.89 10428 SpeI ACTAGT 159935 199.49 5012 SphI GCATGC 258312 322.20 3103 SrfI GCCCGGGC 1632 2.04 491244 SspI AATATT 1241468 1548.52 645 StuI AGGCCT 232245 289.69 3452 StyD4I CCNGG 2825772 3524.67 283 StyI CCWWGG 622469 776.43 1287 SwaI ATTTAAAT 75155 93.74 10667 TaqI TCGA 1354682 1689.74 591 TfiI GAWTC 2020530 2520.27 396 TseI GCWGC 3800386 4740.34 210 Tsp45I GTSAC 2248648 2804.81 356 TspMI CCCGGG 61370 76.55 13063 TspRI CASTG 3635637 4534.84 220 XbaI TCTAGA 237489 296.23 3375 XhoI CTCGAG 78697 98.16 10187 XmaI CCCGGG 61370 76.55 13063 ZraI GACGTC 142987 178.35 5606