# Pimephales promelas genome, 1219.326 Mbp of sequence in 73057 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 204503 167.72 5962 Acc65I GGTACC 104607 85.79 11656 AccI GTMKAC 721613 591.81 1689 AciI CCGC 3235232 2653.29 376 AclI AACGTT 399887 327.96 3049 AcuI CTGAAG 1200843 984.84 1015 AfeI AGCGCT 221206 181.42 5512 AflII CTTAAG 276609 226.85 4408 AflIII ACRYGT 1268916 1040.67 960 AgeI ACCGGT 111055 91.08 10979 AluI AGCT 5819915 4773.06 209 AlwI GGATC 1623243 1331.26 751 ApaI GGGCCC 103729 85.07 11754 ApaLI GTGCAC 318102 260.88 3833 ApeKI GCWGC 2559774 2099.33 476 ApoI RAATTY 2917558 2392.76 417 AscI GGCGCGCC 1228 1.01 992936 AseI ATTAAT 1383437 1134.59 881 AsiSI GCGATCGC 2617 2.15 465925 AvaI CYCGRG 406531 333.41 2999 AvaII GGWCC 1213634 995.33 1004 AvrII CCTAGG 87198 71.51 13983 BaeGI GKGCMC 708585 581.13 1720 BamHI GGATCC 165423 135.67 7370 BanI GGYRCC 477050 391.24 2555 BanII GRGCYC 704131 577.48 1731 BbvI GCAGC 2559774 2099.33 476 BccI CCATC 2808516 2303.33 434 BceAI ACGGC 1018214 835.06 1197 BciVI GTATCC 322069 264.14 3785 BclI TGATCA 586067 480.65 2080 BcoDI GTCTC 2508764 2057.50 486 BfuAI ACCTGC 582092 477.39 2094 BfuCI GATC 4064111 3333.08 300 BglII AGATCT 401646 329.40 3035 BlpI GCTNAGC 224710 184.29 5426 BmrI ACTGGG 507801 416.46 2401 BmtI GCTAGC 147519 120.98 8265 BpmI CTGGAG 826164 677.56 1475 BpuEI CTTGAG 730292 598.93 1669 BsaAI YACGTR 574589 471.23 2122 BsaHI GRCGYC 519615 426.15 2346 BsaI GGTCTC 480697 394.23 2536 BsaWI WCCGGW 440356 361.15 2768 BseRI GAGGAG 921178 755.48 1323 BsgI GTGCAG 792688 650.10 1538 BsiEI CGRYCG 293858 241.00 4149 BsiHKAI GWGCWC 1129115 926.02 1079 BsiWI CGTACG 86118 70.63 14158 BsmAI GTCTC 2508764 2057.50 486 BsmBI CGTCTC 412394 338.21 2956 BsmFI GGGAC 1386873 1137.41 879 BsmI GAATGC 701512 575.33 1738 BsoBI CYCGRG 406531 333.41 2999 Bsp1286I GDGCHC 1836652 1506.28 663 BspCNI CTCAG 3070079 2517.85 397 BspDI ATCGAT 185347 152.01 6578 BspEI TCCGGA 93451 76.64 13047 BspHI TCATGA 629759 516.48 1936 BspMI ACCTGC 582092 477.39 2094 BspQI GCTCTTC 189314 155.26 6440 BsrBI CCGCTC 273913 224.64 4451 BsrFI RCCGGY 388475 318.60 3138 BsrGI TGTACA 689482 565.46 1768 BsrI ACTGG 2611187 2141.50 466 BssHII GCGCGC 98566 80.84 12370 BssSI CACGAG 325919 267.29 3741 BstBI TTCGAA 200894 164.76 6069 BstEII GGTNACC 179224 146.99 6803 BstNI CCWGG 1889527 1549.65 645 BstUI CGCG 1176416 964.81 1036 BstYI RGATCY 1056623 866.56 1153 BstZ17I GTATAC 235578 193.20 5175 Bsu36I CCTNAGG 203284 166.72 5998 BtgI CCRYGG 518417 425.17 2352 BtgZI GCGATG 252601 207.16 4827 BtsCI GGATG 2829979 2320.94 430 ClaI ATCGAT 185347 152.01 6578 CviAII CATG 7614148 6244.55 160 CviKI-1 RGCY 16436526 13480.01 74 CviQI GTAC 3500079 2870.50 348 DdeI CTNAG 4573075 3750.49 266 DpnII GATC 4064111 3333.08 300 DraI TTTAAA 2551365 2092.44 477 EaeI YGGCCR 727973 597.03 1674 EagI CGGCCG 83513 68.49 14600 EarI CTCTTC 986755 809.26 1235 EciI GGCGGA 252850 207.37 4822 Eco53kI GAGCTC 283348 232.38 4303 EcoO109I RGGNCCY 543094 445.40 2245 EcoRI GAATTC 321955 264.04 3787 EcoRV GATATC 269261 220.83 4528 FatI CATG 7614148 6244.55 160 FauI CCCGC 723082 593.02 1686 Fnu4HI GCNGC 3310569 2715.08 368 FokI GGATG 2829979 2320.94 430 FseI GGCCGGCC 3051 2.50 399648 FspI TGCGCA 185821 152.40 6561 HaeII RGCGCY 558079 457.69 2184 HaeIII GGCC 2801810 2297.83 435 HgaI GACGC 1147824 941.36 1062 HhaI GCGC 1870593 1534.12 651 HincII GTYRAC 1050208 861.30 1161 HindIII AAGCTT 495658 406.50 2460 HinfI GANTC 4524293 3710.49 269 HinP1I GCGC 1870593 1534.12 651 HpaI GTTAAC 352219 288.86 3461 HpaII CCGG 1446899 1186.64 842 HphI GGTGA 2604397 2135.93 468 Hpy188I TCNGA 5950791 4880.39 204 Hpy99I CGWCG 552977 453.51 2205 HpyAV CCTTC 2322841 1905.02 524 HpyCH4III ACNGT 6288385 5157.26 193 HpyCH4IV ACGT 3165427 2596.05 385 HpyCH4V TGCA 8784137 7204.09 138 KasI GGCGCC 80410 65.95 15163 KpnI GGTACC 104607 85.79 11656 MboI GATC 4064111 3333.08 300 MboII GAAGA 3862750 3167.94 315 MfeI CAATTG 414759 340.15 2939 MluCI AATT 12683244 10401.85 96 MluI ACGCGT 87375 71.66 13955 MlyI GAGTC 2042050 1674.74 597 MmeI TCCRAC 802516 658.16 1519 MnlI CCTC 9078497 7445.50 134 MscI TGGCCA 366598 300.66 3326 MseI TTAA 14490446 11883.98 84 MspA1I CMGCKG 932916 765.11 1307 MspI CCGG 1446899 1186.64 842 NaeI GCCGGC 79964 65.58 15248 NarI GGCGCC 80410 65.95 15163 NciI CCSGG 612089 501.99 1992 NcoI CCATGG 264881 217.24 4603 NdeI CATATG 450333 369.33 2707 NgoMIV GCCGGC 79964 65.58 15248 NheI GCTAGC 147519 120.98 8265 NlaIII CATG 7614148 6244.55 160 NmeAIII GCCGAG 247478 202.96 4927 NotI GCGGCCGC 3187 2.61 382593 NruI TCGCGA 71751 58.84 16993 NsiI ATGCAT 869569 713.16 1402 NspI RCATGY 2171513 1780.91 561 PacI TTAATTAA 81603 66.92 14942 PaeR7I CTCGAG 132745 108.87 9185 PciI ACATGT 722257 592.34 1688 PleI GAGTC 2042050 1674.74 597 PluTI GGCGCC 80410 65.95 15163 PmeI GTTTAAAC 25195 20.66 48395 PmlI CACGTG 195282 160.16 6243 PpuMI RGGWCCY 289351 237.30 4214 PsiI TTATAA 1135342 931.12 1073 PspGI CCWGG 1889527 1549.65 645 PspOMI GGGCCC 103729 85.07 11754 PspXI VCTCGAGB 35979 29.51 33889 PstI CTGCAG 586055 480.64 2080 PvuI CGATCG 88146 72.29 13833 PvuII CAGCTG 565172 463.51 2157 RsaI GTAC 3500079 2870.50 348 RsrII CGGWCCG 28052 23.01 43466 SacI GAGCTC 283348 232.38 4303 SacII CCGCGG 51104 41.91 23859 SalI GTCGAC 102288 83.89 11920 SapI GCTCTTC 189314 155.26 6440 Sau3AI GATC 4064111 3333.08 300 Sau96I GGNCC 2281988 1871.52 534 SbfI CCTGCAGG 13929 11.42 87538 ScaI AGTACT 292624 239.99 4166 ScrFI CCNGG 2501616 2051.64 487 SexAI ACCWGGT 131976 108.24 9239 SfaNI GCATC 2438661 2000.01 499 SfcI CTRYAG 1588256 1302.57 767 SfoI GGCGCC 80410 65.95 15163 SgrAI CRCCGGYG 12759 10.46 95565 SmaI CCCGGG 74847 61.38 16290 SmlI CTYRAG 1139646 934.65 1069 SnaBI TACGTA 127764 104.78 9543 SpeI ACTAGT 261771 214.68 4657 SphI GCATGC 357478 293.18 3410 SrfI GCCCGGGC 1772 1.45 688107 SspI AATATT 1722282 1412.49 707 StuI AGGCCT 296941 243.53 4106 StyD4I CCNGG 2501616 2051.64 487 StyI CCWWGG 767928 629.80 1587 SwaI ATTTAAAT 103438 84.83 11787 TaqI TCGA 2340521 1919.52 520 TfiI GAWTC 2482243 2035.75 491 TseI GCWGC 2559774 2099.33 476 Tsp45I GTSAC 2769497 2271.33 440 TspMI CCCGGG 74847 61.38 16290 TspRI CASTG 4403855 3611.71 276 XbaI TCTAGA 276475 226.74 4410 XhoI CTCGAG 132745 108.87 9185 XmaI CCCGGG 74847 61.38 16290 ZraI GACGTC 204503 167.72 5962