# Pampus argenteus genome, 350.449 Mbp of sequence in 298139 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 55428 158.16 6322 Acc65I GGTACC 39592 112.98 8851 AccI GTMKAC 308904 881.45 1134 AciI CCGC 888030 2533.98 394 AclI AACGTT 92307 263.40 3796 AcuI CTGAAG 545694 1557.13 642 AfeI AGCGCT 58380 166.59 6002 AflII CTTAAG 115822 330.50 3025 AflIII ACRYGT 612506 1747.78 572 AgeI ACCGGT 27810 79.36 12601 AluI AGCT 3084542 8801.70 113 AlwI GGATC 639397 1824.51 548 ApaI GGGCCC 39115 111.61 8959 ApaLI GTGCAC 139793 398.90 2506 ApeKI GCWGC 1682332 4800.51 208 ApoI RAATTY 956971 2730.70 366 AscI GGCGCGCC 174 0.50 2014071 AseI ATTAAT 477782 1363.34 733 AsiSI GCGATCGC 210 0.60 1668802 AvaI CYCGRG 106541 304.01 3289 AvaII GGWCC 489085 1395.60 716 AvrII CCTAGG 19565 55.83 17912 BaeGI GKGCMC 294495 840.34 1189 BamHI GGATCC 67601 192.90 5184 BanI GGYRCC 189910 541.91 1845 BanII GRGCYC 303897 867.17 1153 BbvI GCAGC 1682332 4800.51 208 BccI CCATC 1217263 3473.44 287 BceAI ACGGC 281286 802.65 1245 BciVI GTATCC 150342 429.00 2331 BclI TGATCA 250942 716.06 1396 BcoDI GTCTC 1171583 3343.10 299 BfuAI ACCTGC 380199 1084.89 921 BfuCI GATC 1541272 4398.00 227 BglII AGATCT 155209 442.89 2257 BlpI GCTNAGC 131021 373.87 2674 BmrI ACTGGG 242563 692.15 1444 BmtI GCTAGC 67999 194.03 5153 BpmI CTGGAG 453847 1295.05 772 BpuEI CTTGAG 275689 786.67 1271 BsaAI YACGTR 195183 556.95 1795 BsaHI GRCGYC 140302 400.35 2497 BsaI GGTCTC 168646 481.23 2078 BsaWI WCCGGW 106657 304.34 3285 BseRI GAGGAG 607559 1733.66 576 BsgI GTGCAG 466632 1331.53 751 BsiEI CGRYCG 46182 131.78 7588 BsiHKAI GWGCWC 514254 1467.42 681 BsiWI CGTACG 11078 31.61 31634 BsmAI GTCTC 1171583 3343.10 299 BsmBI CGTCTC 142444 406.46 2460 BsmFI GGGAC 577075 1646.68 607 BsmI GAATGC 227774 649.95 1538 BsoBI CYCGRG 106541 304.01 3289 Bsp1286I GDGCHC 802981 2291.30 436 BspCNI CTCAG 1654544 4721.22 211 BspDI ATCGAT 50277 143.46 6970 BspEI TCCGGA 20898 59.63 16769 BspHI TCATGA 242774 692.75 1443 BspMI ACCTGC 380199 1084.89 921 BspQI GCTCTTC 81629 232.93 4293 BsrBI CCGCTC 79706 227.44 4396 BsrFI RCCGGY 107740 307.43 3252 BsrGI TGTACA 341009 973.06 1027 BsrI ACTGG 1268002 3618.23 276 BssHII GCGCGC 10765 30.72 32554 BssSI CACGAG 77369 220.77 4529 BstBI TTCGAA 22434 64.02 15621 BstEII GGTNACC 70903 202.32 4942 BstNI CCWGG 985230 2811.34 355 BstUI CGCG 136013 388.11 2576 BstYI RGATCY 422908 1206.76 828 BstZ17I GTATAC 96549 275.50 3629 Bsu36I CCTNAGG 106515 303.94 3290 BtgI CCRYGG 178491 509.32 1963 BtgZI GCGATG 79402 226.57 4413 BtsCI GGATG 1227490 3502.63 285 ClaI ATCGAT 50277 143.46 6970 CviAII CATG 3359579 9586.51 104 CviKI-1 RGCY 7653303 21838.59 45 CviQI GTAC 1552523 4430.10 225 DdeI CTNAG 2294282 6546.70 152 DpnII GATC 1541272 4398.00 227 DraI TTTAAA 825486 2355.51 424 EaeI YGGCCR 231598 660.86 1513 EagI CGGCCG 14539 41.49 24104 EarI CTCTTC 489430 1396.58 716 EciI GGCGGA 61783 176.30 5672 Eco53kI GAGCTC 130757 373.11 2680 EcoO109I RGGNCCY 236408 674.59 1482 EcoRI GAATTC 109799 313.31 3191 EcoRV GATATC 114234 325.97 3067 FatI CATG 3359579 9586.51 104 FauI CCCGC 188350 537.45 1860 Fnu4HI GCNGC 1894702 5406.51 184 FokI GGATG 1227490 3502.63 285 FseI GGCCGGCC 786 2.24 445863 FspI TGCGCA 35962 102.62 9744 HaeII RGCGCY 147124 419.82 2381 HaeIII GGCC 1065555 3040.55 328 HgaI GACGC 277119 790.76 1264 HhaI GCGC 390087 1113.11 898 HincII GTYRAC 461707 1317.47 759 HindIII AAGCTT 216373 617.42 1619 HinfI GANTC 1787529 5100.69 196 HinP1I GCGC 390087 1113.11 898 HpaI GTTAAC 140201 400.06 2499 HpaII CCGG 399782 1140.77 876 HphI GGTGA 1214332 3465.08 288 Hpy188I TCNGA 2369433 6761.14 147 Hpy99I CGWCG 110675 315.81 3166 HpyAV CCTTC 1165974 3327.09 300 HpyCH4III ACNGT 2963452 8456.17 118 HpyCH4IV ACGT 940803 2684.57 372 HpyCH4V TGCA 3972322 11334.97 88 KasI GGCGCC 21034 60.02 16661 KpnI GGTACC 39592 112.98 8851 MboI GATC 1541272 4398.00 227 MboII GAAGA 1807284 5157.06 193 MfeI CAATTG 116578 332.65 3006 MluCI AATT 4207488 12006.01 83 MluI ACGCGT 12893 36.79 27181 MlyI GAGTC 879816 2510.54 398 MmeI TCCRAC 373076 1064.57 939 MnlI CCTC 4864513 13880.82 72 MscI TGGCCA 144125 411.26 2431 MseI TTAA 5272781 15045.81 66 MspA1I CMGCKG 529664 1511.39 661 MspI CCGG 399782 1140.77 876 NaeI GCCGGC 25946 74.04 13506 NarI GGCGCC 21034 60.02 16661 NciI CCSGG 187020 533.66 1873 NcoI CCATGG 102604 292.78 3415 NdeI CATATG 210914 601.84 1661 NgoMIV GCCGGC 25946 74.04 13506 NheI GCTAGC 67999 194.03 5153 NlaIII CATG 3359579 9586.51 104 NmeAIII GCCGAG 70928 202.39 4940 NotI GCGGCCGC 562 1.60 623573 NruI TCGCGA 4642 13.25 75495 NsiI ATGCAT 295385 842.88 1186 NspI RCATGY 1042244 2974.03 336 PacI TTAATTAA 28428 81.12 12327 PaeR7I CTCGAG 31265 89.21 11208 PciI ACATGT 418451 1194.04 837 PleI GAGTC 879816 2510.54 398 PluTI GGCGCC 21034 60.02 16661 PmeI GTTTAAAC 10489 29.93 33411 PmlI CACGTG 59607 170.09 5879 PpuMI RGGWCCY 130024 371.02 2695 PsiI TTATAA 364710 1040.69 960 PspGI CCWGG 985230 2811.34 355 PspOMI GGGCCC 39115 111.61 8959 PspXI VCTCGAGB 9353 26.69 37469 PstI CTGCAG 440463 1256.86 795 PvuI CGATCG 8763 25.01 39991 PvuII CAGCTG 387405 1105.45 904 RsaI GTAC 1552523 4430.10 225 RsrII CGGWCCG 5431 15.50 64527 SacI GAGCTC 130757 373.11 2680 SacII CCGCGG 10906 31.12 32133 SalI GTCGAC 32445 92.58 10801 SapI GCTCTTC 81629 232.93 4293 Sau3AI GATC 1541272 4398.00 227 Sau96I GGNCC 894697 2553.01 391 SbfI CCTGCAGG 12147 34.66 28850 ScaI AGTACT 137331 391.87 2551 ScrFI CCNGG 1172250 3345.00 298 SexAI ACCWGGT 71696 204.58 4887 SfaNI GCATC 1039811 2967.09 337 SfcI CTRYAG 991080 2828.03 353 SfoI GGCGCC 21034 60.02 16661 SgrAI CRCCGGYG 3166 9.03 110691 SmaI CCCGGG 21832 62.30 16052 SmlI CTYRAG 422776 1206.39 828 SnaBI TACGTA 41143 117.40 8517 SpeI ACTAGT 103692 295.88 3379 SphI GCATGC 130362 371.99 2688 SrfI GCCCGGGC 645 1.84 543331 SspI AATATT 571853 1631.77 612 StuI AGGCCT 125984 359.49 2781 StyD4I CCNGG 1172250 3345.00 298 StyI CCWWGG 295635 843.59 1185 SwaI ATTTAAAT 33755 96.32 10382 TaqI TCGA 506563 1445.47 691 TfiI GAWTC 907713 2590.15 386 TseI GCWGC 1682332 4800.51 208 Tsp45I GTSAC 1262962 3603.84 277 TspMI CCCGGG 21832 62.30 16052 TspRI CASTG 2290934 6537.15 152 XbaI TCTAGA 98187 280.18 3569 XhoI CTCGAG 31265 89.21 11208 XmaI CCCGGG 21832 62.30 16052 ZraI GACGTC 55428 158.16 6322