# Oryzias latipes genome, 869.801 Mbp of sequence in 7188 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 169990 195.44 5116 Acc65I GGTACC 95480 109.77 9109 AccI GTMKAC 503221 578.55 1728 AciI CCGC 3575456 4110.66 243 AclI AACGTT 287811 330.89 3022 AcuI CTGAAG 1232391 1416.86 705 AfeI AGCGCT 173065 198.97 5025 AflII CTTAAG 263517 302.96 3300 AflIII ACRYGT 1190132 1368.28 730 AgeI ACCGGT 109565 125.97 7938 AluI AGCT 6498535 7471.29 133 AlwI GGATC 1748266 2009.96 497 ApaI GGGCCC 133316 153.27 6524 ApaLI GTGCAC 275766 317.04 3154 ApeKI GCWGC 3747881 4308.89 232 ApoI RAATTY 2546528 2927.71 341 AscI GGCGCGCC 1293 1.49 672700 AseI ATTAAT 650385 747.74 1337 AsiSI GCGATCGC 1042 1.20 834742 AvaI CYCGRG 316969 364.42 2744 AvaII GGWCC 1473670 1694.26 590 AvrII CCTAGG 95601 109.91 9098 BaeGI GKGCMC 679696 781.44 1279 BamHI GGATCC 204647 235.28 4250 BanI GGYRCC 488259 561.35 1781 BanII GRGCYC 784697 902.16 1108 BbvI GCAGC 3747881 4308.89 232 BccI CCATC 2777014 3192.70 313 BceAI ACGGC 994436 1143.29 874 BciVI GTATCC 233223 268.13 3729 BclI TGATCA 509574 585.85 1706 BcoDI GTCTC 2158300 2481.37 403 BfuAI ACCTGC 803105 923.32 1083 BfuCI GATC 3833397 4407.21 226 BglII AGATCT 374013 430.00 2325 BlpI GCTNAGC 261477 300.62 3326 BmrI ACTGGG 491946 565.58 1768 BmtI GCTAGC 141331 162.49 6154 BpmI CTGGAG 1064795 1224.18 816 BpuEI CTTGAG 514908 591.98 1689 BsaAI YACGTR 493295 567.14 1763 BsaHI GRCGYC 512162 588.83 1698 BsaI GGTCTC 392480 451.23 2216 BsaWI WCCGGW 460570 529.51 1888 BseRI GAGGAG 1241059 1426.83 700 BsgI GTGCAG 948139 1090.06 917 BsiEI CGRYCG 207789 238.89 4185 BsiHKAI GWGCWC 1106833 1272.51 785 BsiWI CGTACG 49893 57.36 17433 BsmAI GTCTC 2158300 2481.37 403 BsmBI CGTCTC 376103 432.40 2312 BsmFI GGGAC 1505710 1731.10 577 BsmI GAATGC 540289 621.16 1609 BsoBI CYCGRG 316969 364.42 2744 Bsp1286I GDGCHC 1850328 2127.30 470 BspCNI CTCAG 3350237 3851.73 259 BspDI ATCGAT 119609 137.51 7272 BspEI TCCGGA 108525 124.77 8014 BspHI TCATGA 500187 575.06 1738 BspMI ACCTGC 803105 923.32 1083 BspQI GCTCTTC 192448 221.26 4519 BsrBI CCGCTC 341930 393.11 2543 BsrFI RCCGGY 411156 472.70 2115 BsrGI TGTACA 449679 516.99 1934 BsrI ACTGG 2532564 2911.66 343 BssHII GCGCGC 77300 88.87 11252 BssSI CACGAG 235304 270.53 3696 BstBI TTCGAA 96520 110.97 9011 BstEII GGTNACC 175865 202.19 4945 BstNI CCWGG 2311971 2658.04 376 BstUI CGCG 819544 942.22 1061 BstYI RGATCY 1129652 1298.75 769 BstZ17I GTATAC 113431 130.41 7668 Bsu36I CCTNAGG 227894 262.01 3816 BtgI CCRYGG 644372 740.83 1349 BtgZI GCGATG 218360 251.05 3983 BtsCI GGATG 2843751 3269.43 305 ClaI ATCGAT 119609 137.51 7272 CviAII CATG 6491757 7463.49 133 CviKI-1 RGCY 16896290 19425.46 51 CviQI GTAC 2512816 2888.95 346 DdeI CTNAG 4805791 5525.16 180 DpnII GATC 3833397 4407.21 226 DraI TTTAAA 2090157 2403.03 416 EaeI YGGCCR 560789 644.73 1551 EagI CGGCCG 69442 79.84 12525 EarI CTCTTC 948367 1090.33 917 EciI GGCGGA 266898 306.85 3258 Eco53kI GAGCTC 311816 358.49 2789 EcoO109I RGGNCCY 693812 797.67 1253 EcoRI GAATTC 293958 337.96 2958 EcoRV GATATC 154430 177.55 5632 FatI CATG 6491757 7463.49 133 FauI CCCGC 892038 1025.57 975 Fnu4HI GCNGC 4668467 5367.28 186 FokI GGATG 2843751 3269.43 305 FseI GGCCGGCC 3861 4.44 225278 FspI TGCGCA 130810 150.39 6649 HaeII RGCGCY 540586 621.51 1608 HaeIII GGCC 2596307 2984.94 335 HgaI GACGC 900386 1035.16 966 HhaI GCGC 1571719 1806.99 553 HincII GTYRAC 877623 1008.99 991 HindIII AAGCTT 510549 586.97 1703 HinfI GANTC 3993630 4591.43 217 HinP1I GCGC 1571719 1806.99 553 HpaI GTTAAC 257872 296.47 3372 HpaII CCGG 1641854 1887.62 529 HphI GGTGA 2459082 2827.18 353 Hpy188I TCNGA 5696477 6549.17 152 Hpy99I CGWCG 392306 451.03 2217 HpyAV CCTTC 2775743 3191.24 313 HpyCH4III ACNGT 4926570 5664.02 176 HpyCH4IV ACGT 2605743 2995.79 333 HpyCH4V TGCA 8237037 9470.02 105 KasI GGCGCC 107450 123.53 8094 KpnI GGTACC 95480 109.77 9109 MboI GATC 3833397 4407.21 226 MboII GAAGA 4085796 4697.39 212 MfeI CAATTG 275468 316.70 3157 MluCI AATT 9068315 10425.73 95 MluI ACGCGT 61070 70.21 14242 MlyI GAGTC 1875621 2156.38 463 MmeI TCCRAC 1016525 1168.69 855 MnlI CCTC 10342144 11890.23 84 MscI TGGCCA 269479 309.82 3227 MseI TTAA 10689162 12289.20 81 MspA1I CMGCKG 1278975 1470.42 680 MspI CCGG 1641854 1887.62 529 NaeI GCCGGC 106046 121.92 8202 NarI GGCGCC 107450 123.53 8094 NciI CCSGG 752200 864.80 1156 NcoI CCATGG 305053 350.72 2851 NdeI CATATG 268658 308.87 3237 NgoMIV GCCGGC 106046 121.92 8202 NheI GCTAGC 141331 162.49 6154 NlaIII CATG 6491757 7463.49 133 NmeAIII GCCGAG 190498 219.01 4565 NotI GCGGCCGC 3767 4.33 230900 NruI TCGCGA 30961 35.60 28093 NsiI ATGCAT 567993 653.01 1531 NspI RCATGY 1803528 2073.49 482 PacI TTAATTAA 44628 51.31 19490 PaeR7I CTCGAG 72810 83.71 11946 PciI ACATGT 677310 778.69 1284 PleI GAGTC 1875621 2156.38 463 PluTI GGCGCC 107450 123.53 8094 PmeI GTTTAAAC 27052 31.10 32152 PmlI CACGTG 190540 219.06 4564 PpuMI RGGWCCY 380625 437.60 2285 PsiI TTATAA 621426 714.45 1399 PspGI CCWGG 2311971 2658.04 376 PspOMI GGGCCC 133316 153.27 6524 PspXI VCTCGAGB 23060 26.51 37719 PstI CTGCAG 1085963 1248.52 800 PvuI CGATCG 38088 43.79 22836 PvuII CAGCTG 815059 937.06 1067 RsaI GTAC 2512816 2888.95 346 RsrII CGGWCCG 39977 45.96 21757 SacI GAGCTC 311816 358.49 2789 SacII CCGCGG 75416 86.70 11533 SalI GTCGAC 78763 90.55 11043 SapI GCTCTTC 192448 221.26 4519 Sau3AI GATC 3833397 4407.21 226 Sau96I GGNCC 2669671 3069.29 325 SbfI CCTGCAGG 30172 34.69 28828 ScaI AGTACT 192236 221.01 4524 ScrFI CCNGG 3064171 3522.84 283 SexAI ACCWGGT 150265 172.76 5788 SfaNI GCATC 2275448 2616.05 382 SfcI CTRYAG 1905258 2190.45 456 SfoI GGCGCC 107450 123.53 8094 SgrAI CRCCGGYG 12886 14.81 67499 SmaI CCCGGG 84435 97.07 10301 SmlI CTYRAG 851235 978.65 1021 SnaBI TACGTA 89908 103.37 9674 SpeI ACTAGT 155842 179.17 5581 SphI GCATGC 262398 301.68 3314 SrfI GCCCGGGC 1704 1.96 510446 SspI AATATT 1001098 1150.95 868 StuI AGGCCT 245768 282.56 3539 StyD4I CCNGG 3064171 3522.84 283 StyI CCWWGG 814033 935.88 1068 SwaI ATTTAAAT 66538 76.50 13072 TaqI TCGA 1319144 1516.60 659 TfiI GAWTC 2118009 2435.05 410 TseI GCWGC 3747881 4308.89 232 Tsp45I GTSAC 2448393 2814.89 355 TspMI CCCGGG 84435 97.07 10301 TspRI CASTG 3683469 4234.84 236 XbaI TCTAGA 277372 318.89 3135 XhoI CTCGAG 72810 83.71 11946 XmaI CCCGGG 84435 97.07 10301 ZraI GACGTC 169990 195.44 5116