# Oreochromis niloticus genome, 927.679 Mbp of sequence in 5677 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 130712 140.90 7097 Acc65I GGTACC 115703 124.72 8017 AccI GTMKAC 683629 736.92 1356 AciI CCGC 2825352 3045.61 328 AclI AACGTT 201562 217.28 4602 AcuI CTGAAG 1452734 1565.99 638 AfeI AGCGCT 213493 230.14 4345 AflII CTTAAG 301153 324.63 3080 AflIII ACRYGT 1317165 1419.85 704 AgeI ACCGGT 106551 114.86 8706 AluI AGCT 8254292 8897.78 112 AlwI GGATC 1670474 1800.70 555 ApaI GGGCCC 120888 130.31 7673 ApaLI GTGCAC 403828 435.31 2297 ApeKI GCWGC 4357750 4697.47 212 ApoI RAATTY 2653016 2859.84 349 AscI GGCGCGCC 878 0.95 1056582 AseI ATTAAT 893901 963.59 1037 AsiSI GCGATCGC 1452 1.57 638897 AvaI CYCGRG 425410 458.57 2180 AvaII GGWCC 1450753 1563.85 639 AvrII CCTAGG 80722 87.01 11492 BaeGI GKGCMC 866138 933.66 1071 BamHI GGATCC 174591 188.20 5313 BanI GGYRCC 556921 600.34 1665 BanII GRGCYC 885049 954.05 1048 BbvI GCAGC 4357750 4697.47 212 BccI CCATC 3117092 3360.10 297 BceAI ACGGC 861105 928.24 1077 BciVI GTATCC 352124 379.58 2634 BclI TGATCA 571361 615.90 1623 BcoDI GTCTC 2769260 2985.15 334 BfuAI ACCTGC 979281 1055.62 947 BfuCI GATC 3885803 4188.73 238 BglII AGATCT 381468 411.21 2431 BlpI GCTNAGC 357423 385.29 2595 BmrI ACTGGG 718235 774.23 1291 BmtI GCTAGC 203400 219.26 4560 BpmI CTGGAG 1161885 1252.46 798 BpuEI CTTGAG 689433 743.18 1345 BsaAI YACGTR 563960 607.93 1644 BsaHI GRCGYC 374686 403.90 2475 BsaI GGTCTC 479164 516.52 1936 BsaWI WCCGGW 343422 370.19 2701 BseRI GAGGAG 1365998 1472.49 679 BsgI GTGCAG 1262065 1360.45 735 BsiEI CGRYCG 172887 186.37 5365 BsiHKAI GWGCWC 1484574 1600.31 624 BsiWI CGTACG 33434 36.04 27746 BsmAI GTCTC 2769260 2985.15 334 BsmBI CGTCTC 355323 383.02 2610 BsmFI GGGAC 1551423 1672.37 597 BsmI GAATGC 641072 691.05 1447 BsoBI CYCGRG 425410 458.57 2180 Bsp1286I GDGCHC 2340970 2523.47 396 BspCNI CTCAG 4397344 4740.15 210 BspDI ATCGAT 133279 143.67 6960 BspEI TCCGGA 64423 69.45 14399 BspHI TCATGA 533189 574.76 1739 BspMI ACCTGC 979281 1055.62 947 BspQI GCTCTTC 234512 252.79 3955 BsrBI CCGCTC 250797 270.35 3698 BsrFI RCCGGY 375506 404.78 2470 BsrGI TGTACA 669079 721.24 1386 BsrI ACTGG 3456952 3726.45 268 BssHII GCGCGC 53639 57.82 17294 BssSI CACGAG 304612 328.36 3045 BstBI TTCGAA 86755 93.52 10693 BstEII GGTNACC 209089 225.39 4436 BstNI CCWGG 2703074 2913.80 343 BstUI CGCG 638610 688.40 1452 BstYI RGATCY 1063205 1146.09 872 BstZ17I GTATAC 197450 212.84 4698 Bsu36I CCTNAGG 276081 297.60 3360 BtgI CCRYGG 537739 579.66 1725 BtgZI GCGATG 247067 266.33 3754 BtsCI GGATG 3062356 3301.09 302 ClaI ATCGAT 133279 143.67 6960 CviAII CATG 7748907 8353.00 119 CviKI-1 RGCY 20783723 22403.99 44 CviQI GTAC 3543256 3819.48 261 DdeI CTNAG 6240778 6727.30 148 DpnII GATC 3885803 4188.73 238 DraI TTTAAA 2151938 2319.70 431 EaeI YGGCCR 638722 688.52 1452 EagI CGGCCG 48292 52.06 19209 EarI CTCTTC 1168385 1259.47 793 EciI GGCGGA 179928 193.95 5155 Eco53kI GAGCTC 370075 398.93 2506 EcoO109I RGGNCCY 711586 767.06 1303 EcoRI GAATTC 312750 337.13 2966 EcoRV GATATC 254069 273.88 3651 FatI CATG 7748907 8353.00 119 FauI CCCGC 660722 712.23 1404 Fnu4HI GCNGC 5030621 5422.80 184 FokI GGATG 3062356 3301.09 302 FseI GGCCGGCC 2704 2.91 343076 FspI TGCGCA 138200 148.97 6712 HaeII RGCGCY 518129 558.52 1790 HaeIII GGCC 3010614 3245.32 308 HgaI GACGC 779498 840.27 1190 HhaI GCGC 1466539 1580.87 632 HincII GTYRAC 976584 1052.72 949 HindIII AAGCTT 576969 621.95 1607 HinfI GANTC 4454596 4801.87 208 HinP1I GCGC 1466539 1580.87 632 HpaI GTTAAC 340754 367.32 2722 HpaII CCGG 1331840 1435.67 696 HphI GGTGA 3121735 3365.10 297 Hpy188I TCNGA 5977386 6443.37 155 Hpy99I CGWCG 347894 375.02 2666 HpyAV CCTTC 3017143 3252.35 307 HpyCH4III ACNGT 6772723 7300.71 136 HpyCH4IV ACGT 2408253 2596.00 385 HpyCH4V TGCA 10165012 10957.46 91 KasI GGCGCC 71257 76.81 13018 KpnI GGTACC 115703 124.72 8017 MboI GATC 3885803 4188.73 238 MboII GAAGA 4458619 4806.21 208 MfeI CAATTG 241801 260.65 3836 MluCI AATT 9846440 10614.05 94 MluI ACGCGT 52396 56.48 17705 MlyI GAGTC 2218492 2391.44 418 MmeI TCCRAC 899203 969.30 1031 MnlI CCTC 12112532 13056.81 76 MscI TGGCCA 386760 416.91 2398 MseI TTAA 12345216 13307.63 75 MspA1I CMGCKG 1544167 1664.55 600 MspI CCGG 1331840 1435.67 696 NaeI GCCGGC 81267 87.60 11415 NarI GGCGCC 71257 76.81 13018 NciI CCSGG 645728 696.07 1436 NcoI CCATGG 265938 286.67 3488 NdeI CATATG 435827 469.80 2128 NgoMIV GCCGGC 81267 87.60 11415 NheI GCTAGC 203400 219.26 4560 NlaIII CATG 7748907 8353.00 119 NmeAIII GCCGAG 227447 245.18 4078 NotI GCGGCCGC 2393 2.58 387663 NruI TCGCGA 27984 30.17 33150 NsiI ATGCAT 679242 732.19 1365 NspI RCATGY 2328085 2509.58 398 PacI TTAATTAA 57772 62.28 16057 PaeR7I CTCGAG 129217 139.29 7179 PciI ACATGT 813387 876.80 1140 PleI GAGTC 2218492 2391.44 418 PluTI GGCGCC 71257 76.81 13018 PmeI GTTTAAAC 28182 30.38 32917 PmlI CACGTG 211052 227.51 4395 PpuMI RGGWCCY 405225 436.82 2289 PsiI TTATAA 748486 806.84 1239 PspGI CCWGG 2703074 2913.80 343 PspOMI GGGCCC 120888 130.31 7673 PspXI VCTCGAGB 39872 42.98 23266 PstI CTGCAG 1131639 1219.86 819 PvuI CGATCG 40300 43.44 23019 PvuII CAGCTG 1122152 1209.63 826 RsaI GTAC 3543256 3819.48 261 RsrII CGGWCCG 26440 28.50 35086 SacI GAGCTC 370075 398.93 2506 SacII CCGCGG 41880 45.14 22150 SalI GTCGAC 84559 91.15 10970 SapI GCTCTTC 234512 252.79 3955 Sau3AI GATC 3885803 4188.73 238 Sau96I GGNCC 2678688 2887.51 346 SbfI CCTGCAGG 34931 37.65 26557 ScaI AGTACT 325182 350.53 2852 ScrFI CCNGG 3348802 3609.87 277 SexAI ACCWGGT 178287 192.19 5203 SfaNI GCATC 2615748 2819.67 354 SfcI CTRYAG 2332222 2514.04 397 SfoI GGCGCC 71257 76.81 13018 SgrAI CRCCGGYG 10563 11.39 87823 SmaI CCCGGG 81439 87.79 11391 SmlI CTYRAG 1119803 1207.10 828 SnaBI TACGTA 90291 97.33 10274 SpeI ACTAGT 219206 236.29 4231 SphI GCATGC 385040 415.06 2409 SrfI GCCCGGGC 2384 2.57 389127 SspI AATATT 1133984 1222.39 818 StuI AGGCCT 331413 357.25 2799 StyD4I CCNGG 3348802 3609.87 277 StyI CCWWGG 873206 941.28 1062 SwaI ATTTAAAT 77035 83.04 12042 TaqI TCGA 1571695 1694.22 590 TfiI GAWTC 2236104 2410.43 414 TseI GCWGC 4357750 4697.47 212 Tsp45I GTSAC 3193726 3442.70 290 TspMI CCCGGG 81439 87.79 11391 TspRI CASTG 5864632 6321.83 158 XbaI TCTAGA 230012 247.94 4033 XhoI CTCGAG 129217 139.29 7179 XmaI CCCGGG 81439 87.79 11391 ZraI GACGTC 130712 140.90 7097