# Neolamprologus brichardi genome, 847.894 Mbp of sequence in 9098 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 115568 136.30 7336 Acc65I GGTACC 97769 115.31 8672 AccI GTMKAC 569607 671.79 1488 AciI CCGC 2411320 2843.89 351 AclI AACGTT 183797 216.77 4613 AcuI CTGAAG 1206381 1422.80 702 AfeI AGCGCT 192838 227.43 4396 AflII CTTAAG 257563 303.77 3291 AflIII ACRYGT 1131162 1334.08 749 AgeI ACCGGT 92641 109.26 9152 AluI AGCT 7028780 8289.69 120 AlwI GGATC 1380642 1628.32 614 ApaI GGGCCC 96592 113.92 8778 ApaLI GTGCAC 349531 412.23 2425 ApeKI GCWGC 3764714 4440.08 225 ApoI RAATTY 2167532 2556.37 391 AscI GGCGCGCC 681 0.80 1245071 AseI ATTAAT 750743 885.42 1129 AsiSI GCGATCGC 1154 1.36 734743 AvaI CYCGRG 371874 438.59 2280 AvaII GGWCC 1166728 1376.03 726 AvrII CCTAGG 65334 77.05 12977 BaeGI GKGCMC 732408 863.80 1157 BamHI GGATCC 142272 167.79 5959 BanI GGYRCC 466627 550.34 1817 BanII GRGCYC 743384 876.74 1140 BbvI GCAGC 3764714 4440.08 225 BccI CCATC 2578021 3040.50 328 BceAI ACGGC 752244 887.19 1127 BciVI GTATCC 296957 350.23 2855 BclI TGATCA 462984 546.04 1831 BcoDI GTCTC 2304484 2717.89 367 BfuAI ACCTGC 820466 967.65 1033 BfuCI GATC 3235306 3815.70 262 BglII AGATCT 323023 380.97 2624 BlpI GCTNAGC 308275 363.58 2750 BmrI ACTGGG 589866 695.68 1437 BmtI GCTAGC 175731 207.26 4824 BpmI CTGGAG 963366 1136.19 880 BpuEI CTTGAG 585970 691.09 1446 BsaAI YACGTR 497595 586.86 1703 BsaHI GRCGYC 329608 388.74 2572 BsaI GGTCTC 391932 462.24 2163 BsaWI WCCGGW 287339 338.89 2950 BseRI GAGGAG 1138757 1343.04 744 BsgI GTGCAG 1077659 1270.98 786 BsiEI CGRYCG 150543 177.55 5632 BsiHKAI GWGCWC 1269381 1497.10 667 BsiWI CGTACG 28429 33.53 29824 BsmAI GTCTC 2304484 2717.89 367 BsmBI CGTCTC 312290 368.31 2715 BsmFI GGGAC 1287236 1518.16 658 BsmI GAATGC 538232 634.79 1575 BsoBI CYCGRG 371874 438.59 2280 Bsp1286I GDGCHC 1985157 2341.28 427 BspCNI CTCAG 3646163 4300.26 232 BspDI ATCGAT 116123 136.95 7301 BspEI TCCGGA 50337 59.37 16844 BspHI TCATGA 430674 507.93 1968 BspMI ACCTGC 820466 967.65 1033 BspQI GCTCTTC 197276 232.67 4298 BsrBI CCGCTC 215607 254.29 3932 BsrFI RCCGGY 319200 376.46 2656 BsrGI TGTACA 538477 635.08 1574 BsrI ACTGG 2859066 3371.96 296 BssHII GCGCGC 46876 55.29 18088 BssSI CACGAG 284931 336.05 2975 BstBI TTCGAA 70796 83.50 11976 BstEII GGTNACC 171989 202.84 4929 BstNI CCWGG 2198468 2592.86 385 BstUI CGCG 552902 652.09 1533 BstYI RGATCY 889565 1049.15 953 BstZ17I GTATAC 160258 189.01 5290 Bsu36I CCTNAGG 226554 267.20 3742 BtgI CCRYGG 455217 536.88 1862 BtgZI GCGATG 220348 259.88 3847 BtsCI GGATG 2545110 3001.68 333 ClaI ATCGAT 116123 136.95 7301 CviAII CATG 6427796 7580.90 131 CviKI-1 RGCY 17576582 20729.70 48 CviQI GTAC 2905271 3426.46 291 DdeI CTNAG 5180851 6110.26 163 DpnII GATC 3235306 3815.70 262 DraI TTTAAA 1826518 2154.18 464 EaeI YGGCCR 531272 626.58 1595 EagI CGGCCG 40416 47.67 20979 EarI CTCTTC 975723 1150.76 868 EciI GGCGGA 152397 179.74 5563 Eco53kI GAGCTC 313893 370.20 2701 EcoO109I RGGNCCY 571657 674.21 1483 EcoRI GAATTC 256365 302.36 3307 EcoRV GATATC 213939 252.32 3963 FatI CATG 6427796 7580.90 131 FauI CCCGC 563922 665.09 1503 Fnu4HI GCNGC 4344530 5123.91 195 FokI GGATG 2545110 3001.68 333 FseI GGCCGGCC 2206 2.60 384358 FspI TGCGCA 118283 139.50 7168 HaeII RGCGCY 457796 539.92 1852 HaeIII GGCC 2491552 2938.52 340 HgaI GACGC 692074 816.23 1225 HhaI GCGC 1286808 1517.65 658 HincII GTYRAC 830253 979.19 1021 HindIII AAGCTT 495166 584.00 1712 HinfI GANTC 3714778 4381.18 228 HinP1I GCGC 1286808 1517.65 658 HpaI GTTAAC 287136 338.65 2952 HpaII CCGG 1105617 1303.96 766 HphI GGTGA 2587078 3051.18 327 Hpy188I TCNGA 4968910 5860.30 170 Hpy99I CGWCG 309384 364.89 2740 HpyAV CCTTC 2542653 2998.79 333 HpyCH4III ACNGT 5610999 6617.57 151 HpyCH4IV ACGT 2150827 2536.67 394 HpyCH4V TGCA 8721598 10286.19 97 KasI GGCGCC 61113 72.08 13874 KpnI GGTACC 97769 115.31 8672 MboI GATC 3235306 3815.70 262 MboII GAAGA 3739046 4409.80 226 MfeI CAATTG 204699 241.42 4142 MluCI AATT 8261295 9743.31 102 MluI ACGCGT 46114 54.39 18386 MlyI GAGTC 1847688 2179.15 458 MmeI TCCRAC 746799 880.77 1135 MnlI CCTC 10156000 11977.91 83 MscI TGGCCA 320724 378.26 2643 MseI TTAA 10439533 12312.31 81 MspA1I CMGCKG 1301554 1535.04 651 MspI CCGG 1105617 1303.96 766 NaeI GCCGGC 68985 81.36 12290 NarI GGCGCC 61113 72.08 13874 NciI CCSGG 535368 631.41 1583 NcoI CCATGG 216261 255.06 3920 NdeI CATATG 366692 432.47 2312 NgoMIV GCCGGC 68985 81.36 12290 NheI GCTAGC 175731 207.26 4824 NlaIII CATG 6427796 7580.90 131 NmeAIII GCCGAG 197401 232.81 4295 NotI GCGGCCGC 1846 2.18 459314 NruI TCGCGA 23159 27.31 36611 NsiI ATGCAT 578465 682.24 1465 NspI RCATGY 1973043 2326.99 429 PacI TTAATTAA 48868 57.63 17350 PaeR7I CTCGAG 115135 135.79 7364 PciI ACATGT 673176 793.94 1259 PleI GAGTC 1847688 2179.15 458 PluTI GGCGCC 61113 72.08 13874 PmeI GTTTAAAC 23600 27.83 35927 PmlI CACGTG 190515 224.69 4450 PpuMI RGGWCCY 325476 383.86 2605 PsiI TTATAA 626433 738.81 1353 PspGI CCWGG 2198468 2592.86 385 PspOMI GGGCCC 96592 113.92 8778 PspXI VCTCGAGB 36059 42.53 23514 PstI CTGCAG 960229 1132.49 883 PvuI CGATCG 36156 42.64 23450 PvuII CAGCTG 936050 1103.97 905 RsaI GTAC 2905271 3426.46 291 RsrII CGGWCCG 24662 29.09 34380 SacI GAGCTC 313893 370.20 2701 SacII CCGCGG 36454 42.99 23259 SalI GTCGAC 74437 87.79 11390 SapI GCTCTTC 197276 232.67 4298 Sau3AI GATC 3235306 3815.70 262 Sau96I GGNCC 2170538 2559.92 390 SbfI CCTGCAGG 29228 34.47 29009 ScaI AGTACT 266933 314.82 3176 ScrFI CCNGG 2733836 3224.27 310 SexAI ACCWGGT 144880 170.87 5852 SfaNI GCATC 2241665 2643.80 378 SfcI CTRYAG 1958768 2310.16 432 SfoI GGCGCC 61113 72.08 13874 SgrAI CRCCGGYG 8802 10.38 96329 SmaI CCCGGG 69004 81.38 12287 SmlI CTYRAG 958668 1130.65 884 SnaBI TACGTA 76354 90.05 11104 SpeI ACTAGT 186537 220.00 4545 SphI GCATGC 331578 391.06 2557 SrfI GCCCGGGC 1944 2.29 436159 SspI AATATT 957242 1128.96 885 StuI AGGCCT 272876 321.83 3107 StyD4I CCNGG 2733836 3224.27 310 StyI CCWWGG 712294 840.07 1190 SwaI ATTTAAAT 64693 76.30 13106 TaqI TCGA 1365806 1610.82 620 TfiI GAWTC 1867090 2202.03 454 TseI GCWGC 3764714 4440.08 225 Tsp45I GTSAC 2681549 3162.60 316 TspMI CCCGGG 69004 81.38 12287 TspRI CASTG 4839216 5707.34 175 XbaI TCTAGA 195061 230.05 4346 XhoI CTCGAG 115135 135.79 7364 XmaI CCCGGG 69004 81.38 12287 ZraI GACGTC 115568 136.30 7336