# Mola mola genome, 639.452 Mbp of sequence in 5552 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 122711 191.90 5211 Acc65I GGTACC 92739 145.03 6895 AccI GTMKAC 541253 846.43 1181 AciI CCGC 2761977 4319.29 231 AclI AACGTT 201956 315.83 3166 AcuI CTGAAG 1017154 1590.67 628 AfeI AGCGCT 140354 219.49 4555 AflII CTTAAG 226917 354.86 2817 AflIII ACRYGT 1089601 1703.96 586 AgeI ACCGGT 70620 110.44 9054 AluI AGCT 5702668 8918.05 112 AlwI GGATC 1408287 2202.33 454 ApaI GGGCCC 115132 180.05 5554 ApaLI GTGCAC 296109 463.07 2159 ApeKI GCWGC 3309679 5175.81 193 ApoI RAATTY 2182216 3412.63 293 AscI GGCGCGCC 927 1.45 689807 AseI ATTAAT 744364 1164.07 859 AsiSI GCGATCGC 883 1.38 724181 AvaI CYCGRG 339310 530.63 1884 AvaII GGWCC 1224302 1914.61 522 AvrII CCTAGG 68419 107.00 9346 BaeGI GKGCMC 692065 1082.28 923 BamHI GGATCC 170872 267.22 3742 BanI GGYRCC 460712 720.48 1387 BanII GRGCYC 754489 1179.90 847 BbvI GCAGC 3309679 5175.81 193 BccI CCATC 2470247 3863.07 258 BceAI ACGGC 783622 1225.46 816 BciVI GTATCC 264614 413.81 2416 BclI TGATCA 437721 684.53 1460 BcoDI GTCTC 2174679 3400.85 294 BfuAI ACCTGC 732445 1145.43 873 BfuCI GATC 3050618 4770.68 209 BglII AGATCT 275396 430.68 2321 BlpI GCTNAGC 277350 433.73 2305 BmrI ACTGGG 543393 849.78 1176 BmtI GCTAGC 123904 193.77 5160 BpmI CTGGAG 894397 1398.69 714 BpuEI CTTGAG 523194 818.19 1222 BsaAI YACGTR 471855 737.91 1355 BsaHI GRCGYC 363436 568.36 1759 BsaI GGTCTC 369255 577.46 1731 BsaWI WCCGGW 319399 499.49 2002 BseRI GAGGAG 1281162 2003.53 499 BsgI GTGCAG 927378 1450.27 689 BsiEI CGRYCG 189129 295.77 3381 BsiHKAI GWGCWC 1114262 1742.53 573 BsiWI CGTACG 33051 51.69 19347 BsmAI GTCTC 2174679 3400.85 294 BsmBI CGTCTC 329972 516.02 1937 BsmFI GGGAC 1370859 2143.80 466 BsmI GAATGC 490276 766.71 1304 BsoBI CYCGRG 339310 530.63 1884 Bsp1286I GDGCHC 1852078 2896.35 345 BspCNI CTCAG 3199429 5003.39 199 BspDI ATCGAT 115392 180.45 5541 BspEI TCCGGA 84751 132.54 7545 BspHI TCATGA 446012 697.49 1433 BspMI ACCTGC 732445 1145.43 873 BspQI GCTCTTC 170671 266.90 3746 BsrBI CCGCTC 237841 371.95 2688 BsrFI RCCGGY 317469 496.47 2014 BsrGI TGTACA 540206 844.80 1183 BsrI ACTGG 2538740 3970.18 251 BssHII GCGCGC 50252 78.59 12724 BssSI CACGAG 236010 369.08 2709 BstBI TTCGAA 83216 130.14 7684 BstEII GGTNACC 154532 241.66 4137 BstNI CCWGG 2182925 3413.74 292 BstUI CGCG 634211 991.80 1008 BstYI RGATCY 856130 1338.85 746 BstZ17I GTATAC 150821 235.86 4239 Bsu36I CCTNAGG 227838 356.30 2806 BtgI CCRYGG 482942 755.24 1324 BtgZI GCGATG 221049 345.69 2892 BtsCI GGATG 2484028 3884.62 257 ClaI ATCGAT 115392 180.45 5541 CviAII CATG 6004530 9390.12 106 CviKI-1 RGCY 15807806 24720.86 40 CviQI GTAC 2794510 4370.16 228 DdeI CTNAG 4438065 6940.42 144 DpnII GATC 3050618 4770.68 209 DraI TTTAAA 1393883 2179.81 458 EaeI YGGCCR 620109 969.75 1031 EagI CGGCCG 65702 102.75 9732 EarI CTCTTC 897509 1403.56 712 EciI GGCGGA 201062 314.43 3180 Eco53kI GAGCTC 297497 465.24 2149 EcoO109I RGGNCCY 585814 916.12 1091 EcoRI GAATTC 251353 393.08 2544 EcoRV GATATC 211566 330.86 3022 FatI CATG 6004530 9390.12 106 FauI CCCGC 636808 995.87 1004 Fnu4HI GCNGC 4000141 6255.58 159 FokI GGATG 2484028 3884.62 257 FseI GGCCGGCC 2667 4.17 239764 FspI TGCGCA 113987 178.26 5609 HaeII RGCGCY 405611 634.31 1576 HaeIII GGCC 2643184 4133.51 241 HgaI GACGC 752279 1176.44 850 HhaI GCGC 1252203 1958.24 510 HincII GTYRAC 862221 1348.37 741 HindIII AAGCTT 371086 580.32 1723 HinfI GANTC 3528149 5517.46 181 HinP1I GCGC 1252203 1958.24 510 HpaI GTTAAC 254646 398.23 2511 HpaII CCGG 1325102 2072.25 482 HphI GGTGA 2437047 3811.15 262 Hpy188I TCNGA 4604583 7200.83 138 Hpy99I CGWCG 388912 608.20 1644 HpyAV CCTTC 2346499 3669.55 272 HpyCH4III ACNGT 5059287 7911.91 126 HpyCH4IV ACGT 2207726 3452.53 289 HpyCH4V TGCA 7422943 11608.29 86 KasI GGCGCC 69439 108.59 9208 KpnI GGTACC 92739 145.03 6895 MboI GATC 3050618 4770.68 209 MboII GAAGA 3310472 5177.05 193 MfeI CAATTG 260852 407.93 2451 MluCI AATT 8140037 12729.71 78 MluI ACGCGT 46002 71.94 13900 MlyI GAGTC 1762228 2755.84 362 MmeI TCCRAC 791459 1237.71 807 MnlI CCTC 10064765 15739.67 63 MscI TGGCCA 334480 523.07 1911 MseI TTAA 9025055 14113.73 70 MspA1I CMGCKG 1123990 1757.74 568 MspI CCGG 1325102 2072.25 482 NaeI GCCGGC 89101 139.34 7176 NarI GGCGCC 69439 108.59 9208 NciI CCSGG 658202 1029.32 971 NcoI CCATGG 230760 360.87 2771 NdeI CATATG 314850 492.37 2030 NgoMIV GCCGGC 89101 139.34 7176 NheI GCTAGC 123904 193.77 5160 NlaIII CATG 6004530 9390.12 106 NmeAIII GCCGAG 224842 351.62 2844 NotI GCGGCCGC 2393 3.74 267217 NruI TCGCGA 28101 43.95 22755 NsiI ATGCAT 481159 752.46 1328 NspI RCATGY 1735502 2714.05 368 PacI TTAATTAA 42431 66.36 15070 PaeR7I CTCGAG 84392 131.98 7577 PciI ACATGT 643816 1006.82 993 PleI GAGTC 1762228 2755.84 362 PluTI GGCGCC 69439 108.59 9208 PmeI GTTTAAAC 17917 28.02 35689 PmlI CACGTG 171286 267.86 3733 PpuMI RGGWCCY 318696 498.39 2006 PsiI TTATAA 481956 753.70 1326 PspGI CCWGG 2182925 3413.74 292 PspOMI GGGCCC 115132 180.05 5554 PspXI VCTCGAGB 24663 38.57 25927 PstI CTGCAG 789148 1234.10 810 PvuI CGATCG 34076 53.29 18765 PvuII CAGCTG 729672 1141.09 876 RsaI GTAC 2794510 4370.16 228 RsrII CGGWCCG 25450 39.80 25125 SacI GAGCTC 297497 465.24 2149 SacII CCGCGG 46581 72.85 13727 SalI GTCGAC 80480 125.86 7945 SapI GCTCTTC 170671 266.90 3746 Sau3AI GATC 3050618 4770.68 209 Sau96I GGNCC 2299660 3596.30 278 SbfI CCTGCAGG 24774 38.74 25811 ScaI AGTACT 223892 350.13 2856 ScrFI CCNGG 2841127 4443.07 225 SexAI ACCWGGT 142406 222.70 4490 SfaNI GCATC 2006099 3137.22 318 SfcI CTRYAG 1651218 2582.24 387 SfoI GGCGCC 69439 108.59 9208 SgrAI CRCCGGYG 10150 15.87 63000 SmaI CCCGGG 76669 119.90 8340 SmlI CTYRAG 834503 1305.03 766 SnaBI TACGTA 84838 132.67 7537 SpeI ACTAGT 177585 277.71 3600 SphI GCATGC 244446 382.27 2615 SrfI GCCCGGGC 1874 2.93 341223 SspI AATATT 910703 1424.19 702 StuI AGGCCT 244298 382.04 2617 StyD4I CCNGG 2841127 4443.07 225 StyI CCWWGG 720152 1126.20 887 SwaI ATTTAAAT 50508 78.99 12660 TaqI TCGA 1386360 2168.04 461 TfiI GAWTC 1765921 2761.62 362 TseI GCWGC 3309679 5175.81 193 Tsp45I GTSAC 2521363 3943.01 253 TspMI CCCGGG 76669 119.90 8340 TspRI CASTG 4125814 6452.11 154 XbaI TCTAGA 171365 267.99 3731 XhoI CTCGAG 84392 131.98 7577 XmaI CCCGGG 76669 119.90 8340 ZraI GACGTC 122711 191.90 5211