# Miichthys miiuy genome, 619.301 Mbp of sequence in 6294 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 167612 270.65 3694 Acc65I GGTACC 72818 117.58 8504 AccI GTMKAC 537008 867.12 1153 AciI CCGC 2300469 3714.62 269 AclI AACGTT 180166 290.92 3437 AcuI CTGAAG 1018909 1645.26 607 AfeI AGCGCT 137090 221.36 4517 AflII CTTAAG 189842 306.54 3262 AflIII ACRYGT 1084293 1750.83 571 AgeI ACCGGT 68119 109.99 9091 AluI AGCT 5909747 9542.61 104 AlwI GGATC 1180597 1906.34 524 ApaI GGGCCC 78009 125.96 7938 ApaLI GTGCAC 286696 462.93 2160 ApeKI GCWGC 3302647 5332.86 187 ApoI RAATTY 1568655 2532.95 394 AscI GGCGCGCC 716 1.16 864945 AseI ATTAAT 671311 1083.98 922 AsiSI GCGATCGC 795 1.28 778994 AvaI CYCGRG 305422 493.17 2027 AvaII GGWCC 1024971 1655.05 604 AvrII CCTAGG 39369 63.57 15730 BaeGI GKGCMC 615371 993.65 1006 BamHI GGATCC 121556 196.28 5094 BanI GGYRCC 396741 640.63 1560 BanII GRGCYC 648169 1046.61 955 BbvI GCAGC 3302647 5332.86 187 BccI CCATC 2310388 3730.64 268 BceAI ACGGC 710352 1147.02 871 BciVI GTATCC 251537 406.16 2462 BclI TGATCA 416639 672.76 1486 BcoDI GTCTC 2261621 3651.89 273 BfuAI ACCTGC 675771 1091.18 916 BfuCI GATC 2826369 4563.81 219 BglII AGATCT 279539 451.38 2215 BlpI GCTNAGC 293392 473.75 2110 BmrI ACTGGG 441185 712.39 1403 BmtI GCTAGC 143311 231.41 4321 BpmI CTGGAG 854571 1379.90 724 BpuEI CTTGAG 509207 822.23 1216 BsaAI YACGTR 450180 726.92 1375 BsaHI GRCGYC 379927 613.48 1630 BsaI GGTCTC 348324 562.45 1777 BsaWI WCCGGW 263648 425.72 2348 BseRI GAGGAG 1306985 2110.42 473 BsgI GTGCAG 898710 1451.17 689 BsiEI CGRYCG 129376 208.91 4786 BsiHKAI GWGCWC 1088761 1758.05 568 BsiWI CGTACG 32908 53.14 18819 BsmAI GTCTC 2261621 3651.89 273 BsmBI CGTCTC 312116 503.98 1984 BsmFI GGGAC 1133762 1830.71 546 BsmI GAATGC 442546 714.59 1399 BsoBI CYCGRG 305422 493.17 2027 Bsp1286I GDGCHC 1697310 2740.69 364 BspCNI CTCAG 3156334 5096.61 196 BspDI ATCGAT 101209 163.42 6119 BspEI TCCGGA 51472 83.11 12031 BspHI TCATGA 457141 738.16 1354 BspMI ACCTGC 675771 1091.18 916 BspQI GCTCTTC 165229 266.80 3748 BsrBI CCGCTC 217526 351.24 2847 BsrFI RCCGGY 279116 450.70 2218 BsrGI TGTACA 550966 889.66 1124 BsrI ACTGG 2306113 3723.74 268 BssHII GCGCGC 37804 61.04 16381 BssSI CACGAG 241807 390.45 2561 BstBI TTCGAA 61220 98.85 10115 BstEII GGTNACC 141205 228.01 4385 BstNI CCWGG 1900630 3068.99 325 BstUI CGCG 444070 717.05 1394 BstYI RGATCY 754352 1218.07 820 BstZ17I GTATAC 146921 237.24 4215 Bsu36I CCTNAGG 207179 334.54 2989 BtgI CCRYGG 433651 700.23 1428 BtgZI GCGATG 204998 331.02 3021 BtsCI GGATG 2280146 3681.81 271 ClaI ATCGAT 101209 163.42 6119 CviAII CATG 6114590 9873.38 101 CviKI-1 RGCY 15008542 24234.66 41 CviQI GTAC 2796146 4515.00 221 DdeI CTNAG 4321510 6978.05 143 DpnII GATC 2826369 4563.81 219 DraI TTTAAA 1276699 2061.52 485 EaeI YGGCCR 491369 793.43 1260 EagI CGGCCG 40073 64.71 15454 EarI CTCTTC 962341 1553.92 643 EciI GGCGGA 157454 254.24 3933 Eco53kI GAGCTC 290286 468.73 2133 EcoO109I RGGNCCY 460478 743.55 1344 EcoRI GAATTC 197237 318.48 3139 EcoRV GATATC 189841 306.54 3262 FatI CATG 6114590 9873.38 101 FauI CCCGC 537639 868.14 1151 Fnu4HI GCNGC 3867871 6245.55 160 FokI GGATG 2280146 3681.81 271 FseI GGCCGGCC 2104 3.40 294344 FspI TGCGCA 89154 143.96 6946 HaeII RGCGCY 355211 573.57 1743 HaeIII GGCC 2152539 3475.76 287 HgaI GACGC 667557 1077.92 927 HhaI GCGC 991656 1601.25 624 HincII GTYRAC 828330 1337.52 747 HindIII AAGCTT 350540 566.03 1766 HinfI GANTC 3242103 5235.10 191 HinP1I GCGC 991656 1601.25 624 HpaI GTTAAC 246991 398.82 2507 HpaII CCGG 1043963 1685.71 593 HphI GGTGA 2367878 3823.47 261 Hpy188I TCNGA 4420588 7138.03 140 Hpy99I CGWCG 327724 529.18 1889 HpyAV CCTTC 2144555 3462.87 288 HpyCH4III ACNGT 5251986 8480.51 117 HpyCH4IV ACGT 2163655 3493.71 286 HpyCH4V TGCA 7092267 11452.06 87 KasI GGCGCC 49395 79.76 12537 KpnI GGTACC 72818 117.58 8504 MboI GATC 2826369 4563.81 219 MboII GAAGA 3438168 5551.69 180 MfeI CAATTG 167790 270.93 3690 MluCI AATT 6467734 10443.61 95 MluI ACGCGT 37690 60.86 16431 MlyI GAGTC 1686068 2722.53 367 MmeI TCCRAC 728513 1176.35 850 MnlI CCTC 9875309 15945.90 62 MscI TGGCCA 275243 444.44 2250 MseI TTAA 8211314 13259.01 75 MspA1I CMGCKG 1097490 1772.14 564 MspI CCGG 1043963 1685.71 593 NaeI GCCGGC 69993 113.02 8848 NarI GGCGCC 49395 79.76 12537 NciI CCSGG 501143 809.21 1235 NcoI CCATGG 215313 347.67 2876 NdeI CATATG 308238 497.72 2009 NgoMIV GCCGGC 69993 113.02 8848 NheI GCTAGC 143311 231.41 4321 NlaIII CATG 6114590 9873.38 101 NmeAIII GCCGAG 195314 315.38 3170 NotI GCGGCCGC 1736 2.80 356740 NruI TCGCGA 16709 26.98 37063 NsiI ATGCAT 496200 801.23 1248 NspI RCATGY 1819288 2937.65 340 PacI TTAATTAA 43484 70.21 14242 PaeR7I CTCGAG 99658 160.92 6214 PciI ACATGT 643632 1039.29 962 PleI GAGTC 1686068 2722.53 367 PluTI GGCGCC 49395 79.76 12537 PmeI GTTTAAAC 17422 28.13 35547 PmlI CACGTG 162347 262.15 3814 PpuMI RGGWCCY 256435 414.07 2415 PsiI TTATAA 489617 790.60 1264 PspGI CCWGG 1900630 3068.99 325 PspOMI GGGCCC 78009 125.96 7938 PspXI VCTCGAGB 31531 50.91 19641 PstI CTGCAG 832326 1343.98 744 PvuI CGATCG 24218 39.11 25571 PvuII CAGCTG 755975 1220.69 819 RsaI GTAC 2796146 4515.00 221 RsrII CGGWCCG 15480 25.00 40006 SacI GAGCTC 290286 468.73 2133 SacII CCGCGG 33731 54.47 18359 SalI GTCGAC 80612 130.17 7682 SapI GCTCTTC 165229 266.80 3748 Sau3AI GATC 2826369 4563.81 219 Sau96I GGNCC 1842319 2974.84 336 SbfI CCTGCAGG 21608 34.89 28660 ScaI AGTACT 236087 381.22 2623 ScrFI CCNGG 2401773 3878.20 257 SexAI ACCWGGT 120400 194.41 5143 SfaNI GCATC 1836461 2965.38 337 SfcI CTRYAG 1782895 2878.88 347 SfoI GGCGCC 49395 79.76 12537 SgrAI CRCCGGYG 8674 14.01 71397 SmaI CCCGGG 58287 94.12 10625 SmlI CTYRAG 798707 1289.69 775 SnaBI TACGTA 79378 128.17 7801 SpeI ACTAGT 151393 244.46 4090 SphI GCATGC 280627 453.14 2206 SrfI GCCCGGGC 2005 3.24 308878 SspI AATATT 833857 1346.45 742 StuI AGGCCT 227001 366.54 2728 StyD4I CCNGG 2401773 3878.20 257 StyI CCWWGG 583204 941.71 1061 SwaI ATTTAAAT 49485 79.90 12514 TaqI TCGA 1260750 2035.76 491 TfiI GAWTC 1556035 2512.57 397 TseI GCWGC 3302647 5332.86 187 Tsp45I GTSAC 2471337 3990.53 250 TspMI CCCGGG 58287 94.12 10625 TspRI CASTG 4239193 6845.13 146 XbaI TCTAGA 174462 281.71 3549 XhoI CTCGAG 99658 160.92 6214 XmaI CCCGGG 58287 94.12 10625 ZraI GACGTC 167612 270.65 3694