# Melanochromis auratus genome, 68.239 Mbp of sequence in 63297 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 12903 189.09 5288 Acc65I GGTACC 14284 209.32 4777 AccI GTMKAC 62564 916.84 1090 AciI CCGC 271083 3972.57 251 AclI AACGTT 18531 271.56 3682 AcuI CTGAAG 110881 1624.90 615 AfeI AGCGCT 16351 239.61 4173 AflII CTTAAG 24310 356.25 2807 AflIII ACRYGT 106455 1560.04 641 AgeI ACCGGT 11618 170.26 5873 AluI AGCT 677791 9932.66 100 AlwI GGATC 172757 2531.66 394 ApaI GGGCCC 12382 181.45 5511 ApaLI GTGCAC 32739 479.77 2084 ApeKI GCWGC 376333 5514.96 181 ApoI RAATTY 198553 2909.69 343 AscI GGCGCGCC 75 1.10 909848 AseI ATTAAT 62723 919.17 1087 AsiSI GCGATCGC 167 2.45 408614 AvaI CYCGRG 41725 611.46 1635 AvaII GGWCC 136096 1994.41 501 AvrII CCTAGG 6684 97.95 10209 BaeGI GKGCMC 75543 1107.04 903 BamHI GGATCC 30752 450.65 2218 BanI GGYRCC 52685 772.07 1295 BanII GRGCYC 77074 1129.48 885 BbvI GCAGC 376333 5514.96 181 BccI CCATC 236910 3471.79 288 BceAI ACGGC 88793 1301.21 768 BciVI GTATCC 31791 465.88 2146 BclI TGATCA 44935 658.50 1518 BcoDI GTCTC 224452 3289.22 304 BfuAI ACCTGC 83902 1229.54 813 BfuCI GATC 338708 4963.58 201 BglII AGATCT 29955 438.97 2278 BlpI GCTNAGC 28749 421.30 2373 BmrI ACTGGG 58107 851.53 1174 BmtI GCTAGC 18815 275.72 3626 BpmI CTGGAG 90165 1321.32 756 BpuEI CTTGAG 53406 782.64 1277 BsaAI YACGTR 52422 768.22 1301 BsaHI GRCGYC 35760 524.04 1908 BsaI GGTCTC 40684 596.20 1677 BsaWI WCCGGW 41516 608.39 1643 BseRI GAGGAG 101181 1482.75 674 BsgI GTGCAG 102640 1504.13 664 BsiEI CGRYCG 20605 301.96 3311 BsiHKAI GWGCWC 120213 1761.66 567 BsiWI CGTACG 3901 57.17 17492 BsmAI GTCTC 224452 3289.22 304 BsmBI CGTCTC 32905 482.20 2073 BsmFI GGGAC 135741 1989.21 502 BsmI GAATGC 50229 736.08 1358 BsoBI CYCGRG 41725 611.46 1635 Bsp1286I GDGCHC 196849 2884.71 346 BspCNI CTCAG 351784 5155.20 193 BspDI ATCGAT 11646 170.67 5859 BspEI TCCGGA 8826 129.34 7731 BspHI TCATGA 40556 594.33 1682 BspMI ACCTGC 83902 1229.54 813 BspQI GCTCTTC 18878 276.65 3614 BsrBI CCGCTC 22719 332.93 3003 BsrFI RCCGGY 41081 602.02 1661 BsrGI TGTACA 51094 748.75 1335 BsrI ACTGG 273892 4013.74 249 BssHII GCGCGC 4920 72.10 13869 BssSI CACGAG 28129 412.22 2425 BstBI TTCGAA 8782 128.70 7770 BstEII GGTNACC 17918 262.58 3808 BstNI CCWGG 226768 3323.16 300 BstUI CGCG 73196 1072.65 932 BstYI RGATCY 102956 1508.76 662 BstZ17I GTATAC 16054 235.26 4250 Bsu36I CCTNAGG 21666 317.50 3149 BtgI CCRYGG 50481 739.77 1351 BtgZI GCGATG 21989 322.24 3103 BtsCI GGATG 234330 3433.98 291 ClaI ATCGAT 11646 170.67 5859 CviAII CATG 600514 8800.21 113 CviKI-1 RGCY 1727236 25311.70 39 CviQI GTAC 299756 4392.76 227 DdeI CTNAG 498549 7305.96 136 DpnII GATC 338708 4963.58 201 DraI TTTAAA 151141 2214.89 451 EaeI YGGCCR 56589 829.28 1205 EagI CGGCCG 5891 86.33 11583 EarI CTCTTC 89498 1311.54 762 EciI GGCGGA 17477 256.12 3904 Eco53kI GAGCTC 30860 452.24 2211 EcoO109I RGGNCCY 66706 977.54 1022 EcoRI GAATTC 25328 371.17 2694 EcoRV GATATC 21071 308.78 3238 FatI CATG 600514 8800.21 113 FauI CCCGC 62631 917.82 1089 Fnu4HI GCNGC 439619 6442.38 155 FokI GGATG 234330 3433.98 291 FseI GGCCGGCC 331 4.85 206159 FspI TGCGCA 13343 195.53 5114 HaeII RGCGCY 42071 616.53 1621 HaeIII GGCC 264978 3883.11 257 HgaI GACGC 74804 1096.21 912 HhaI GCGC 137177 2010.25 497 HincII GTYRAC 88048 1290.30 775 HindIII AAGCTT 46156 676.39 1478 HinfI GANTC 371284 5440.96 183 HinP1I GCGC 137177 2010.25 497 HpaI GTTAAC 28284 414.49 2412 HpaII CCGG 150476 2205.14 453 HphI GGTGA 245363 3595.66 278 Hpy188I TCNGA 482160 7065.79 141 Hpy99I CGWCG 41002 600.86 1664 HpyAV CCTTC 235305 3448.27 290 HpyCH4III ACNGT 533391 7816.55 127 HpyCH4IV ACGT 223115 3269.63 305 HpyCH4V TGCA 802341 11757.87 85 KasI GGCGCC 6205 90.93 10997 KpnI GGTACC 14284 209.32 4777 MboI GATC 338708 4963.58 201 MboII GAAGA 342967 5025.99 198 MfeI CAATTG 21370 313.17 3193 MluCI AATT 735667 10780.80 92 MluI ACGCGT 5540 81.19 12317 MlyI GAGTC 187883 2753.32 363 MmeI TCCRAC 75333 1103.96 905 MnlI CCTC 958992 14053.51 71 MscI TGGCCA 31075 455.39 2195 MseI TTAA 914362 13399.48 74 MspA1I CMGCKG 134514 1971.23 507 MspI CCGG 150476 2205.14 453 NaeI GCCGGC 9418 138.02 7245 NarI GGCGCC 6205 90.93 10997 NciI CCSGG 72548 1063.15 940 NcoI CCATGG 22075 323.50 3091 NdeI CATATG 33982 497.99 2008 NgoMIV GCCGGC 9418 138.02 7245 NheI GCTAGC 18815 275.72 3626 NlaIII CATG 600514 8800.21 113 NmeAIII GCCGAG 20781 304.53 3283 NotI GCGGCCGC 342 5.01 199528 NruI TCGCGA 3922 57.47 17398 NsiI ATGCAT 49530 725.84 1377 NspI RCATGY 181569 2660.79 375 PacI TTAATTAA 3502 51.32 19485 PaeR7I CTCGAG 11014 161.40 6195 PciI ACATGT 60926 892.84 1120 PleI GAGTC 187883 2753.32 363 PluTI GGCGCC 6205 90.93 10997 PmeI GTTTAAAC 1984 29.07 34394 PmlI CACGTG 19064 279.37 3579 PpuMI RGGWCCY 34567 506.56 1974 PsiI TTATAA 53771 787.98 1269 PspGI CCWGG 226768 3323.16 300 PspOMI GGGCCC 12382 181.45 5511 PspXI VCTCGAGB 3355 49.17 20339 PstI CTGCAG 97198 1424.38 702 PvuI CGATCG 4226 61.93 16147 PvuII CAGCTG 95313 1396.76 715 RsaI GTAC 299756 4392.76 227 RsrII CGGWCCG 3162 46.34 21580 SacI GAGCTC 30860 452.24 2211 SacII CCGCGG 5957 87.30 11455 SalI GTCGAC 14229 208.52 4795 SapI GCTCTTC 18878 276.65 3614 Sau3AI GATC 338708 4963.58 201 Sau96I GGNCC 251027 3678.66 271 SbfI CCTGCAGG 2776 40.68 24581 ScaI AGTACT 25153 368.60 2712 ScrFI CCNGG 299316 4386.31 227 SexAI ACCWGGT 15251 223.50 4474 SfaNI GCATC 213122 3123.19 320 SfcI CTRYAG 188622 2764.15 361 SfoI GGCGCC 6205 90.93 10997 SgrAI CRCCGGYG 1039 15.23 65677 SmaI CCCGGG 9548 139.92 7146 SmlI CTYRAG 88730 1300.29 769 SnaBI TACGTA 8824 129.31 7733 SpeI ACTAGT 18029 264.21 3784 SphI GCATGC 35635 522.21 1914 SrfI GCCCGGGC 295 4.32 231317 SspI AATATT 81237 1190.48 839 StuI AGGCCT 24953 365.67 2734 StyD4I CCNGG 299316 4386.31 227 StyI CCWWGG 73454 1076.43 928 SwaI ATTTAAAT 4894 71.72 13943 TaqI TCGA 153506 2249.55 444 TfiI GAWTC 183401 2687.64 372 TseI GCWGC 376333 5514.96 181 Tsp45I GTSAC 263123 3855.92 259 TspMI CCCGGG 9548 139.92 7146 TspRI CASTG 453471 6645.37 150 XbaI TCTAGA 29527 432.70 2311 XhoI CTCGAG 11014 161.40 6195 XmaI CCCGGG 9548 139.92 7146 ZraI GACGTC 12903 189.09 5288