# Mchenga conophoros genome, 73.426 Mbp of sequence in 61923 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 13719 186.84 5352 Acc65I GGTACC 15766 214.72 4657 AccI GTMKAC 68107 927.57 1078 AciI CCGC 311851 4247.17 235 AclI AACGTT 19767 269.21 3714 AcuI CTGAAG 118064 1607.94 621 AfeI AGCGCT 17611 239.85 4169 AflII CTTAAG 27039 368.25 2715 AflIII ACRYGT 112732 1535.32 651 AgeI ACCGGT 13369 182.08 5492 AluI AGCT 713266 9714.14 102 AlwI GGATC 191502 2608.11 383 ApaI GGGCCC 15806 215.27 4645 ApaLI GTGCAC 34207 465.87 2146 ApeKI GCWGC 395577 5387.46 185 ApoI RAATTY 215723 2937.98 340 AscI GGCGCGCC 119 1.62 617021 AseI ATTAAT 67033 912.94 1095 AsiSI GCGATCGC 183 2.49 401232 AvaI CYCGRG 50218 683.93 1462 AvaII GGWCC 158838 2163.25 462 AvrII CCTAGG 8025 109.29 9149 BaeGI GKGCMC 84958 1157.06 864 BamHI GGATCC 35063 477.53 2094 BanI GGYRCC 59213 806.44 1240 BanII GRGCYC 85242 1160.93 861 BbvI GCAGC 395577 5387.46 185 BccI CCATC 252156 3434.17 291 BceAI ACGGC 99347 1353.03 739 BciVI GTATCC 34018 463.30 2158 BclI TGATCA 47664 649.15 1540 BcoDI GTCTC 242003 3295.90 303 BfuAI ACCTGC 91635 1248.00 801 BfuCI GATC 367857 5009.93 199 BglII AGATCT 31681 431.47 2317 BlpI GCTNAGC 30515 415.59 2406 BmrI ACTGGG 62919 856.91 1166 BmtI GCTAGC 19833 270.11 3702 BpmI CTGGAG 96601 1315.63 760 BpuEI CTTGAG 57769 786.77 1271 BsaAI YACGTR 55795 759.89 1315 BsaHI GRCGYC 39661 540.15 1851 BsaI GGTCTC 44643 608.00 1644 BsaWI WCCGGW 50371 686.01 1457 BseRI GAGGAG 108943 1483.72 673 BsgI GTGCAG 107562 1464.91 682 BsiEI CGRYCG 24855 338.51 2954 BsiHKAI GWGCWC 126026 1716.38 582 BsiWI CGTACG 4365 59.45 16821 BsmAI GTCTC 242003 3295.90 303 BsmBI CGTCTC 34630 471.63 2120 BsmFI GGGAC 155153 2113.07 473 BsmI GAATGC 54260 738.98 1353 BsoBI CYCGRG 50218 683.93 1462 Bsp1286I GDGCHC 214170 2916.83 342 BspCNI CTCAG 369781 5036.13 198 BspDI ATCGAT 12850 175.01 5714 BspEI TCCGGA 11214 152.73 6547 BspHI TCATGA 42497 578.78 1727 BspMI ACCTGC 91635 1248.00 801 BspQI GCTCTTC 19771 269.27 3713 BsrBI CCGCTC 25222 343.50 2911 BsrFI RCCGGY 47227 643.20 1554 BsrGI TGTACA 52363 713.14 1402 BsrI ACTGG 296311 4035.53 247 BssHII GCGCGC 5903 80.39 12438 BssSI CACGAG 30701 418.12 2391 BstBI TTCGAA 10588 144.20 6934 BstEII GGTNACC 20871 284.25 3518 BstNI CCWGG 252940 3444.85 290 BstUI CGCG 86812 1182.31 845 BstYI RGATCY 112176 1527.75 654 BstZ17I GTATAC 17236 234.74 4260 Bsu36I CCTNAGG 24376 331.98 3012 BtgI CCRYGG 57202 779.05 1283 BtgZI GCGATG 23643 322.00 3105 BtsCI GGATG 250748 3415.00 292 ClaI ATCGAT 12850 175.01 5714 CviAII CATG 634896 8646.80 115 CviKI-1 RGCY 1865253 25403.32 39 CviQI GTAC 320322 4362.54 229 DdeI CTNAG 530808 7229.20 138 DpnII GATC 367857 5009.93 199 DraI TTTAAA 160406 2184.61 457 EaeI YGGCCR 63708 867.65 1152 EagI CGGCCG 7286 99.23 10077 EarI CTCTTC 96756 1317.74 758 EciI GGCGGA 20996 285.95 3497 Eco53kI GAGCTC 32043 436.40 2291 EcoO109I RGGNCCY 79112 1077.44 928 EcoRI GAATTC 28036 381.83 2618 EcoRV GATATC 22433 305.52 3273 FatI CATG 634896 8646.80 115 FauI CCCGC 73864 1005.97 994 Fnu4HI GCNGC 467450 6366.31 157 FokI GGATG 250748 3415.00 292 FseI GGCCGGCC 426 5.80 172360 FspI TGCGCA 14243 193.98 5155 HaeII RGCGCY 47357 644.97 1550 HaeIII GGCC 305434 4159.78 240 HgaI GACGC 80545 1096.96 911 HhaI GCGC 152904 2082.44 480 HincII GTYRAC 96176 1309.84 763 HindIII AAGCTT 48902 666.01 1501 HinfI GANTC 400898 5459.92 183 HinP1I GCGC 152904 2082.44 480 HpaI GTTAAC 31234 425.38 2350 HpaII CCGG 186726 2543.07 393 HphI GGTGA 265187 3611.64 276 Hpy188I TCNGA 514582 7008.21 142 Hpy99I CGWCG 45723 622.71 1605 HpyAV CCTTC 258594 3521.85 283 HpyCH4III ACNGT 566699 7718.01 129 HpyCH4IV ACGT 238759 3251.71 307 HpyCH4V TGCA 841218 11456.75 87 KasI GGCGCC 7557 102.92 9716 KpnI GGTACC 15766 214.72 4657 MboI GATC 367857 5009.93 199 MboII GAAGA 369217 5028.45 198 MfeI CAATTG 23574 321.06 3114 MluCI AATT 795985 10840.71 92 MluI ACGCGT 6112 83.24 12013 MlyI GAGTC 202733 2761.07 362 MmeI TCCRAC 82442 1122.80 890 MnlI CCTC 1043818 14216.00 70 MscI TGGCCA 33508 456.35 2191 MseI TTAA 985595 13423.05 74 MspA1I CMGCKG 143091 1948.79 513 MspI CCGG 186726 2543.07 393 NaeI GCCGGC 10370 141.23 7080 NarI GGCGCC 7557 102.92 9716 NciI CCSGG 96032 1307.88 764 NcoI CCATGG 24235 330.06 3029 NdeI CATATG 35480 483.21 2069 NgoMIV GCCGGC 10370 141.23 7080 NheI GCTAGC 19833 270.11 3702 NlaIII CATG 634896 8646.80 115 NmeAIII GCCGAG 23053 313.96 3185 NotI GCGGCCGC 433 5.90 169574 NruI TCGCGA 4679 63.72 15692 NsiI ATGCAT 52169 710.50 1407 NspI RCATGY 192712 2624.59 381 PacI TTAATTAA 3755 51.14 19554 PaeR7I CTCGAG 12529 170.64 5860 PciI ACATGT 63826 869.26 1150 PleI GAGTC 202733 2761.07 362 PluTI GGCGCC 7557 102.92 9716 PmeI GTTTAAAC 2207 30.06 33269 PmlI CACGTG 20149 274.41 3644 PpuMI RGGWCCY 40835 556.14 1798 PsiI TTATAA 57417 781.98 1278 PspGI CCWGG 252940 3444.85 290 PspOMI GGGCCC 15806 215.27 4645 PspXI VCTCGAGB 3753 51.11 19564 PstI CTGCAG 101829 1386.83 721 PvuI CGATCG 5017 68.33 14635 PvuII CAGCTG 99947 1361.20 734 RsaI GTAC 320322 4362.54 229 RsrII CGGWCCG 4274 58.21 17179 SacI GAGCTC 32043 436.40 2291 SacII CCGCGG 7008 95.44 10477 SalI GTCGAC 15782 214.94 4652 SapI GCTCTTC 19771 269.27 3713 Sau3AI GATC 367857 5009.93 199 Sau96I GGNCC 298379 4063.69 246 SbfI CCTGCAGG 2974 40.50 24689 ScaI AGTACT 27215 370.65 2697 ScrFI CCNGG 348972 4752.73 210 SexAI ACCWGGT 16950 230.85 4331 SfaNI GCATC 224855 3062.35 326 SfcI CTRYAG 197976 2696.28 370 SfoI GGCGCC 7557 102.92 9716 SgrAI CRCCGGYG 1174 15.99 62543 SmaI CCCGGG 13405 182.57 5477 SmlI CTYRAG 97337 1325.66 754 SnaBI TACGTA 9625 131.09 7628 SpeI ACTAGT 18848 256.70 3895 SphI GCATGC 38592 525.59 1902 SrfI GCCCGGGC 359 4.89 204528 SspI AATATT 86079 1172.33 853 StuI AGGCCT 27575 375.55 2662 StyD4I CCNGG 348972 4752.73 210 StyI CCWWGG 85498 1164.42 858 SwaI ATTTAAAT 5072 69.08 14476 TaqI TCGA 173105 2357.56 424 TfiI GAWTC 198165 2698.86 370 TseI GCWGC 395577 5387.46 185 Tsp45I GTSAC 278857 3797.82 263 TspMI CCCGGG 13405 182.57 5477 TspRI CASTG 476469 6489.14 154 XbaI TCTAGA 33784 460.11 2173 XhoI CTCGAG 12529 170.64 5860 XmaI CCCGGG 13405 182.57 5477 ZraI GACGTC 13719 186.84 5352