# Maylandia zebra genome, 859.842 Mbp of sequence in 3555 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 142058 165.21 6052 Acc65I GGTACC 126289 146.87 6808 AccI GTMKAC 665610 774.11 1291 AciI CCGC 3038402 3533.67 282 AclI AACGTT 211780 246.30 4060 AcuI CTGAAG 1405371 1634.45 611 AfeI AGCGCT 237917 276.70 3614 AflII CTTAAG 283840 330.11 3029 AflIII ACRYGT 1305694 1518.53 658 AgeI ACCGGT 125745 146.24 6837 AluI AGCT 8203992 9541.28 104 AlwI GGATC 1658460 1928.80 518 ApaI GGGCCC 132341 153.91 6497 ApaLI GTGCAC 397868 462.72 2161 ApeKI GCWGC 4417907 5138.04 194 ApoI RAATTY 2529137 2941.40 339 AscI GGCGCGCC 1047 1.22 821243 AseI ATTAAT 853199 992.27 1007 AsiSI GCGATCGC 1438 1.67 597943 AvaI CYCGRG 471130 547.93 1825 AvaII GGWCC 1502487 1747.40 572 AvrII CCTAGG 80304 93.39 10707 BaeGI GKGCMC 877392 1020.41 979 BamHI GGATCC 170407 198.18 5045 BanI GGYRCC 584484 679.76 1471 BanII GRGCYC 920420 1070.45 934 BbvI GCAGC 4417907 5138.04 194 BccI CCATC 3135170 3646.22 274 BceAI ACGGC 911308 1059.86 943 BciVI GTATCC 342898 398.79 2507 BclI TGATCA 555268 645.78 1548 BcoDI GTCTC 2738157 3184.49 314 BfuAI ACCTGC 972751 1131.31 883 BfuCI GATC 3867324 4497.71 222 BglII AGATCT 379032 440.82 2268 BlpI GCTNAGC 356761 414.91 2410 BmrI ACTGGG 708482 823.97 1213 BmtI GCTAGC 224212 260.76 3834 BpmI CTGGAG 1171741 1362.74 733 BpuEI CTTGAG 671047 780.43 1281 BsaAI YACGTR 590923 687.25 1455 BsaHI GRCGYC 414602 482.18 2073 BsaI GGTCTC 473608 550.81 1815 BsaWI WCCGGW 389150 452.58 2209 BseRI GAGGAG 1334706 1552.27 644 BsgI GTGCAG 1288356 1498.36 667 BsiEI CGRYCG 204991 238.41 4194 BsiHKAI GWGCWC 1470824 1710.57 584 BsiWI CGTACG 37135 43.19 23154 BsmAI GTCTC 2738157 3184.49 314 BsmBI CGTCTC 366722 426.50 2344 BsmFI GGGAC 1594976 1854.96 539 BsmI GAATGC 620869 722.07 1384 BsoBI CYCGRG 471130 547.93 1825 Bsp1286I GDGCHC 2369836 2756.13 362 BspCNI CTCAG 4300508 5001.51 199 BspDI ATCGAT 141470 164.53 6077 BspEI TCCGGA 65981 76.74 13031 BspHI TCATGA 505729 588.16 1700 BspMI ACCTGC 972751 1131.31 883 BspQI GCTCTTC 234336 272.53 3669 BsrBI CCGCTC 258730 300.90 3323 BsrFI RCCGGY 423418 492.44 2030 BsrGI TGTACA 648056 753.69 1326 BsrI ACTGG 3404272 3959.18 252 BssHII GCGCGC 57721 67.13 14896 BssSI CACGAG 318105 369.96 2703 BstBI TTCGAA 89693 104.31 9586 BstEII GGTNACC 208922 242.98 4115 BstNI CCWGG 2770100 3221.64 310 BstUI CGCG 732302 851.67 1174 BstYI RGATCY 1058379 1230.90 812 BstZ17I GTATAC 187730 218.33 4580 Bsu36I CCTNAGG 284917 331.36 3017 BtgI CCRYGG 566718 659.10 1517 BtgZI GCGATG 251046 291.97 3425 BtsCI GGATG 3086333 3589.42 278 ClaI ATCGAT 141470 164.53 6077 CviAII CATG 7522423 8748.61 114 CviKI-1 RGCY 20901550 24308.59 41 CviQI GTAC 3487329 4055.78 246 DdeI CTNAG 6100436 7094.83 140 DpnII GATC 3867324 4497.71 222 DraI TTTAAA 2043180 2376.23 420 EaeI YGGCCR 675342 785.43 1273 EagI CGGCCG 60681 70.57 14169 EarI CTCTTC 1169409 1360.03 735 EciI GGCGGA 208570 242.57 4122 Eco53kI GAGCTC 368591 428.67 2332 EcoO109I RGGNCCY 771683 897.47 1114 EcoRI GAATTC 305361 355.14 2815 EcoRV GATATC 256570 298.39 3351 FatI CATG 7522423 8748.61 114 FauI CCCGC 710034 825.77 1210 Fnu4HI GCNGC 5128280 5964.21 167 FokI GGATG 3086333 3589.42 278 FseI GGCCGGCC 2981 3.47 288440 FspI TGCGCA 142468 165.69 6035 HaeII RGCGCY 562457 654.14 1528 HaeIII GGCC 3142494 3654.73 273 HgaI GACGC 835949 972.21 1028 HhaI GCGC 1607637 1869.69 534 HincII GTYRAC 963081 1120.07 892 HindIII AAGCTT 569793 662.67 1509 HinfI GANTC 4369165 5081.36 196 HinP1I GCGC 1607637 1869.69 534 HpaI GTTAAC 337871 392.95 2544 HpaII CCGG 1485701 1727.88 578 HphI GGTGA 3103146 3608.97 277 Hpy188I TCNGA 5867356 6823.76 146 Hpy99I CGWCG 398625 463.60 2157 HpyAV CCTTC 2995318 3483.57 287 HpyCH4III ACNGT 6587079 7660.80 130 HpyCH4IV ACGT 2538011 2951.72 338 HpyCH4V TGCA 10105129 11752.31 85 KasI GGCGCC 83071 96.61 10350 KpnI GGTACC 126289 146.87 6808 MboI GATC 3867324 4497.71 222 MboII GAAGA 4392298 5108.26 195 MfeI CAATTG 244819 284.73 3512 MluCI AATT 9473751 11018.01 90 MluI ACGCGT 60480 70.34 14216 MlyI GAGTC 2184732 2540.85 393 MmeI TCCRAC 901476 1048.42 953 MnlI CCTC 12112896 14087.35 70 MscI TGGCCA 402297 467.87 2137 MseI TTAA 11827274 13755.17 72 MspA1I CMGCKG 1560430 1814.79 551 MspI CCGG 1485701 1727.88 578 NaeI GCCGGC 88417 102.83 9724 NarI GGCGCC 83071 96.61 10350 NciI CCSGG 733296 852.83 1172 NcoI CCATGG 266076 309.45 3231 NdeI CATATG 426127 495.59 2017 NgoMIV GCCGGC 88417 102.83 9724 NheI GCTAGC 224212 260.76 3834 NlaIII CATG 7522423 8748.61 114 NmeAIII GCCGAG 242208 281.69 3550 NotI GCGGCCGC 4909 5.71 175156 NruI TCGCGA 36924 42.94 23286 NsiI ATGCAT 666459 775.09 1290 NspI RCATGY 2264033 2633.08 379 PacI TTAATTAA 55391 64.42 15523 PaeR7I CTCGAG 137846 160.32 6237 PciI ACATGT 772016 897.86 1113 PleI GAGTC 2184732 2540.85 393 PluTI GGCGCC 83071 96.61 10350 PmeI GTTTAAAC 25957 30.19 33125 PmlI CACGTG 220221 256.12 3904 PpuMI RGGWCCY 430253 500.39 1998 PsiI TTATAA 704837 819.73 1219 PspGI CCWGG 2770100 3221.64 310 PspOMI GGGCCC 132341 153.91 6497 PspXI VCTCGAGB 41386 48.13 20776 PstI CTGCAG 1104229 1284.22 778 PvuI CGATCG 46756 54.38 18389 PvuII CAGCTG 1119478 1301.96 768 RsaI GTAC 3487329 4055.78 246 RsrII CGGWCCG 38640 44.94 22252 SacI GAGCTC 368591 428.67 2332 SacII CCGCGG 49760 57.87 17279 SalI GTCGAC 91171 106.03 9431 SapI GCTCTTC 234336 272.53 3669 Sau3AI GATC 3867324 4497.71 222 Sau96I GGNCC 2831246 3292.75 303 SbfI CCTGCAGG 32128 37.36 26763 ScaI AGTACT 312764 363.75 2749 ScrFI CCNGG 3503396 4074.46 245 SexAI ACCWGGT 188162 218.83 4569 SfaNI GCATC 2616837 3043.39 328 SfcI CTRYAG 2268671 2638.47 379 SfoI GGCGCC 83071 96.61 10350 SgrAI CRCCGGYG 11287 13.13 76179 SmaI CCCGGG 97601 113.51 8809 SmlI CTYRAG 1092733 1270.85 786 SnaBI TACGTA 96718 112.48 8890 SpeI ACTAGT 222984 259.33 3856 SphI GCATGC 377754 439.33 2276 SrfI GCCCGGGC 4999 5.81 172002 SspI AATATT 1096894 1275.69 783 StuI AGGCCT 316384 367.96 2717 StyD4I CCNGG 3503396 4074.46 245 StyI CCWWGG 898444 1044.89 957 SwaI ATTTAAAT 72205 83.97 11908 TaqI TCGA 1665990 1937.55 516 TfiI GAWTC 2184433 2540.50 393 TseI GCWGC 4417907 5138.04 194 Tsp45I GTSAC 3111285 3618.44 276 TspMI CCCGGG 97601 113.51 8809 TspRI CASTG 5707816 6638.21 150 XbaI TCTAGA 221701 257.84 3878 XhoI CTCGAG 137846 160.32 6237 XmaI CCCGGG 97601 113.51 8809 ZraI GACGTC 142058 165.21 6052