# Latimeria chalumnae genome, 2860.576 Mbp of sequence in 22818 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 155154 54.24 18437 Acc65I GGTACC 495302 173.15 5775 AccI GTMKAC 1891645 661.28 1512 AciI CCGC 6949517 2429.41 411 AclI AACGTT 356474 124.62 8024 AcuI CTGAAG 3689011 1289.60 775 AfeI AGCGCT 617419 215.84 4633 AflII CTTAAG 795024 277.92 3598 AflIII ACRYGT 2187394 764.67 1307 AgeI ACCGGT 157100 54.92 18208 AluI AGCT 17652243 6170.87 162 AlwI GGATC 5739527 2006.42 498 ApaI GGGCCC 1029555 359.91 2778 ApaLI GTGCAC 1130713 395.27 2529 ApeKI GCWGC 9780016 3418.90 292 ApoI RAATTY 9250975 3233.96 309 AscI GGCGCGCC 2397 0.84 1193398 AseI ATTAAT 1879605 657.07 1521 AsiSI GCGATCGC 1891 0.66 1512731 AvaI CYCGRG 1221932 427.16 2341 AvaII GGWCC 5312464 1857.13 538 AvrII CCTAGG 545793 190.80 5241 BaeGI GKGCMC 3738561 1306.93 765 BamHI GGATCC 842337 294.46 3395 BanI GGYRCC 2708452 946.82 1056 BanII GRGCYC 3455984 1208.14 827 BbvI GCAGC 9780016 3418.90 292 BccI CCATC 8861092 3097.66 322 BceAI ACGGC 1467347 512.96 1949 BciVI GTATCC 1406376 491.64 2034 BclI TGATCA 1265905 442.54 2259 BcoDI GTCTC 7247413 2533.55 394 BfuAI ACCTGC 2269677 793.43 1260 BfuCI GATC 10572926 3696.08 270 BglII AGATCT 1158467 404.98 2469 BlpI GCTNAGC 768908 268.79 3720 BmrI ACTGGG 2787966 974.62 1026 BmtI GCTAGC 426653 149.15 6704 BpmI CTGGAG 3372690 1179.02 848 BpuEI CTTGAG 1677892 586.56 1704 BsaAI YACGTR 1109284 387.78 2578 BsaHI GRCGYC 777096 271.66 3681 BsaI GGTCTC 1827456 638.84 1565 BsaWI WCCGGW 737931 257.97 3876 BseRI GAGGAG 3247497 1135.26 880 BsgI GTGCAG 2978553 1041.24 960 BsiEI CGRYCG 268639 93.91 10648 BsiHKAI GWGCWC 3661873 1280.12 781 BsiWI CGTACG 50226 17.56 56954 BsmAI GTCTC 7247413 2533.55 394 BsmBI CGTCTC 506875 177.19 5643 BsmFI GGGAC 5988535 2093.47 477 BsmI GAATGC 1844643 644.85 1550 BsoBI CYCGRG 1221932 427.16 2341 Bsp1286I GDGCHC 7934404 2773.71 360 BspCNI CTCAG 10602173 3706.31 269 BspDI ATCGAT 165798 57.96 17253 BspEI TCCGGA 241515 84.43 11844 BspHI TCATGA 1341613 469.00 2132 BspMI ACCTGC 2269677 793.43 1260 BspQI GCTCTTC 544836 190.46 5250 BsrBI CCGCTC 565128 197.56 5061 BsrFI RCCGGY 654615 228.84 4369 BsrGI TGTACA 1996515 697.94 1432 BsrI ACTGG 10725323 3749.36 266 BssHII GCGCGC 89345 31.23 32017 BssSI CACGAG 440894 154.13 6488 BstBI TTCGAA 201257 70.36 14213 BstEII GGTNACC 631105 220.62 4532 BstNI CCWGG 11526489 4029.43 248 BstUI CGCG 1316567 460.25 2172 BstYI RGATCY 4017310 1404.37 712 BstZ17I GTATAC 640062 223.75 4469 Bsu36I CCTNAGG 865112 302.43 3306 BtgI CCRYGG 1727811 604.01 1655 BtgZI GCGATG 389389 136.12 7346 BtsCI GGATG 8392986 2934.02 340 ClaI ATCGAT 165798 57.96 17253 CviAII CATG 19129746 6687.38 149 CviKI-1 RGCY 57159324 19981.76 50 CviQI GTAC 11493811 4018.01 248 DdeI CTNAG 16747239 5854.50 170 DpnII GATC 10572926 3696.08 270 DraI TTTAAA 7722337 2699.57 370 EaeI YGGCCR 1926900 673.61 1484 EagI CGGCCG 88914 31.08 32172 EarI CTCTTC 2751160 961.75 1039 EciI GGCGGA 467626 163.47 6117 Eco53kI GAGCTC 761746 266.29 3755 EcoO109I RGGNCCY 4018806 1404.89 711 EcoRI GAATTC 865957 302.72 3303 EcoRV GATATC 614076 214.67 4658 FatI CATG 19129746 6687.38 149 FauI CCCGC 1922357 672.02 1488 Fnu4HI GCNGC 11445886 4001.25 249 FokI GGATG 8392986 2934.02 340 FseI GGCCGGCC 19577 6.84 146119 FspI TGCGCA 257670 90.08 11101 HaeII RGCGCY 1491853 521.52 1917 HaeIII GGCC 11509304 4023.42 248 HgaI GACGC 1338456 467.90 2137 HhaI GCGC 3399568 1188.42 841 HincII GTYRAC 2315290 809.38 1235 HindIII AAGCTT 1349435 471.74 2119 HinfI GANTC 10728903 3750.61 266 HinP1I GCGC 3399568 1188.42 841 HpaI GTTAAC 972681 340.03 2940 HpaII CCGG 3512091 1227.76 814 HphI GGTGA 7662804 2678.76 373 Hpy188I TCNGA 13003676 4545.83 219 Hpy99I CGWCG 513363 179.46 5572 HpyAV CCTTC 9190606 3212.85 311 HpyCH4III ACNGT 16256398 5682.91 175 HpyCH4IV ACGT 4140788 1447.54 690 HpyCH4V TGCA 25418841 8885.92 112 KasI GGCGCC 261944 91.57 10920 KpnI GGTACC 495302 173.15 5775 MboI GATC 10572926 3696.08 270 MboII GAAGA 10495052 3668.86 272 MfeI CAATTG 1144945 400.25 2498 MluCI AATT 30512026 10666.39 93 MluI ACGCGT 85134 29.76 33600 MlyI GAGTC 5052759 1766.34 566 MmeI TCCRAC 2363913 826.38 1210 MnlI CCTC 34576361 12087.20 82 MscI TGGCCA 1384844 484.11 2065 MseI TTAA 32978315 11528.56 86 MspA1I CMGCKG 2721896 951.52 1050 MspI CCGG 3512091 1227.76 814 NaeI GCCGGC 203084 70.99 14085 NarI GGCGCC 261944 91.57 10920 NciI CCSGG 2327296 813.58 1229 NcoI CCATGG 1174422 410.55 2435 NdeI CATATG 1007242 352.11 2840 NgoMIV GCCGGC 203084 70.99 14085 NheI GCTAGC 426653 149.15 6704 NlaIII CATG 19129746 6687.38 149 NmeAIII GCCGAG 356066 124.47 8033 NotI GCGGCCGC 3926 1.37 728623 NruI TCGCGA 55330 19.34 51700 NsiI ATGCAT 1797005 628.20 1591 NspI RCATGY 5115340 1788.22 559 PacI TTAATTAA 116874 40.86 24475 PaeR7I CTCGAG 197289 68.97 14499 PciI ACATGT 1471350 514.35 1944 PleI GAGTC 5052759 1766.34 566 PluTI GGCGCC 261944 91.57 10920 PmeI GTTTAAAC 47595 16.64 60102 PmlI CACGTG 406537 142.12 7036 PpuMI RGGWCCY 1856894 649.13 1540 PsiI TTATAA 2312770 808.50 1236 PspGI CCWGG 11526489 4029.43 248 PspOMI GGGCCC 1029555 359.91 2778 PspXI VCTCGAGB 46862 16.38 61042 PstI CTGCAG 1983401 693.36 1442 PvuI CGATCG 61581 21.53 46452 PvuII CAGCTG 1880239 657.29 1521 RsaI GTAC 11493811 4018.01 248 RsrII CGGWCCG 24718 8.64 115728 SacI GAGCTC 761746 266.29 3755 SacII CCGCGG 95230 33.29 30038 SalI GTCGAC 113595 39.71 25182 SapI GCTCTTC 544836 190.46 5250 Sau3AI GATC 10572926 3696.08 270 Sau96I GGNCC 11529411 4030.45 248 SbfI CCTGCAGG 54354 19.00 52628 ScaI AGTACT 1239948 433.46 2307 ScrFI CCNGG 13853785 4843.01 206 SexAI ACCWGGT 559332 195.53 5114 SfaNI GCATC 6784868 2371.85 421 SfcI CTRYAG 5553968 1941.56 515 SfoI GGCGCC 261944 91.57 10920 SgrAI CRCCGGYG 13086 4.57 218598 SmaI CCCGGG 422968 147.86 6763 SmlI CTYRAG 2670205 933.45 1071 SnaBI TACGTA 226942 79.33 12604 SpeI ACTAGT 807622 282.33 3541 SphI GCATGC 1246217 435.65 2295 SrfI GCCCGGGC 8223 2.87 347874 SspI AATATT 2960559 1034.95 966 StuI AGGCCT 1037471 362.68 2757 StyD4I CCNGG 13853785 4843.01 206 StyI CCWWGG 4365884 1526.23 655 SwaI ATTTAAAT 150487 52.61 19008 TaqI TCGA 2660654 930.11 1075 TfiI GAWTC 5676144 1984.27 503 TseI GCWGC 9780016 3418.90 292 Tsp45I GTSAC 6550061 2289.77 436 TspMI CCCGGG 422968 147.86 6763 TspRI CASTG 14702160 5139.58 194 XbaI TCTAGA 773259 270.32 3699 XhoI CTCGAG 197289 68.97 14499 XmaI CCCGGG 422968 147.86 6763 ZraI GACGTC 155154 54.24 18437