# Lates calcarifer genome, 668.465 Mbp of sequence in 3807 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 112662 168.54 5933 Acc65I GGTACC 79815 119.40 8375 AccI GTMKAC 585743 876.25 1141 AciI CCGC 2078533 3109.41 321 AclI AACGTT 140810 210.65 4747 AcuI CTGAAG 1143400 1710.49 584 AfeI AGCGCT 129036 193.03 5180 AflII CTTAAG 243735 364.62 2742 AflIII ACRYGT 1044187 1562.07 640 AgeI ACCGGT 62203 93.05 10746 AluI AGCT 6605207 9881.16 101 AlwI GGATC 1297147 1940.49 515 ApaI GGGCCC 107445 160.73 6221 ApaLI GTGCAC 338220 505.97 1976 ApeKI GCWGC 3593656 5375.98 186 ApoI RAATTY 2023451 3027.01 330 AscI GGCGCGCC 505 0.76 1323692 AseI ATTAAT 756039 1131.01 884 AsiSI GCGATCGC 825 1.23 810260 AvaI CYCGRG 245193 366.80 2726 AvaII GGWCC 1126803 1685.66 593 AvrII CCTAGG 52410 78.40 12754 BaeGI GKGCMC 729164 1090.80 916 BamHI GGATCC 133246 199.33 5016 BanI GGYRCC 411298 615.29 1625 BanII GRGCYC 715567 1070.46 934 BbvI GCAGC 3593656 5375.98 186 BccI CCATC 2530950 3786.21 264 BceAI ACGGC 570341 853.21 1172 BciVI GTATCC 283296 423.80 2359 BclI TGATCA 518310 775.37 1289 BcoDI GTCTC 2683327 4014.16 249 BfuAI ACCTGC 787858 1178.61 848 BfuCI GATC 3148051 4709.37 212 BglII AGATCT 313234 468.59 2134 BlpI GCTNAGC 308522 461.54 2166 BmrI ACTGGG 582530 871.44 1147 BmtI GCTAGC 156560 234.21 4269 BpmI CTGGAG 1018908 1524.25 656 BpuEI CTTGAG 581050 869.23 1150 BsaAI YACGTR 360780 539.71 1852 BsaHI GRCGYC 322175 481.96 2074 BsaI GGTCTC 423204 633.10 1579 BsaWI WCCGGW 219894 328.95 3039 BseRI GAGGAG 1566335 2343.18 426 BsgI GTGCAG 1035251 1548.70 645 BsiEI CGRYCG 131889 197.30 5068 BsiHKAI GWGCWC 1199664 1794.66 557 BsiWI CGTACG 21376 31.98 31271 BsmAI GTCTC 2683327 4014.16 249 BsmBI CGTCTC 286312 428.31 2334 BsmFI GGGAC 1298638 1942.72 514 BsmI GAATGC 473130 707.79 1412 BsoBI CYCGRG 245193 366.80 2726 Bsp1286I GDGCHC 1899490 2841.57 351 BspCNI CTCAG 4126820 6173.58 161 BspDI ATCGAT 81230 121.52 8229 BspEI TCCGGA 42726 63.92 15645 BspHI TCATGA 481030 719.60 1389 BspMI ACCTGC 787858 1178.61 848 BspQI GCTCTTC 162428 242.99 4115 BsrBI CCGCTC 190498 284.98 3509 BsrFI RCCGGY 240294 359.47 2781 BsrGI TGTACA 620188 927.78 1077 BsrI ACTGG 2940928 4399.53 227 BssHII GCGCGC 36708 54.91 18210 BssSI CACGAG 178783 267.45 3738 BstBI TTCGAA 51230 76.64 13048 BstEII GGTNACC 151089 226.02 4424 BstNI CCWGG 2277066 3406.41 293 BstUI CGCG 413237 618.19 1617 BstYI RGATCY 860806 1287.74 776 BstZ17I GTATAC 175687 262.82 3804 Bsu36I CCTNAGG 258029 386.00 2590 BtgI CCRYGG 438119 655.41 1525 BtgZI GCGATG 165849 248.10 4030 BtsCI GGATG 2473372 3700.08 270 ClaI ATCGAT 81230 121.52 8229 CviAII CATG 6681042 9994.61 100 CviKI-1 RGCY 16758477 25070.10 39 CviQI GTAC 2960058 4428.14 225 DdeI CTNAG 5548546 8300.43 120 DpnII GATC 3148051 4709.37 212 DraI TTTAAA 1376201 2058.75 485 EaeI YGGCCR 542486 811.54 1232 EagI CGGCCG 42911 64.19 15577 EarI CTCTTC 988773 1479.17 676 EciI GGCGGA 142704 213.48 4684 Eco53kI GAGCTC 299240 447.65 2233 EcoO109I RGGNCCY 582684 871.67 1147 EcoRI GAATTC 261196 390.74 2559 EcoRV GATATC 203311 304.15 3287 FatI CATG 6681042 9994.61 100 FauI CCCGC 520188 778.18 1285 Fnu4HI GCNGC 4101742 6136.06 162 FokI GGATG 2473372 3700.08 270 FseI GGCCGGCC 1923 2.88 347615 FspI TGCGCA 84850 126.93 7878 HaeII RGCGCY 336428 503.28 1986 HaeIII GGCC 2428358 3632.74 275 HgaI GACGC 648491 970.12 1030 HhaI GCGC 921820 1379.01 725 HincII GTYRAC 915555 1369.64 730 HindIII AAGCTT 387669 579.94 1724 HinfI GANTC 3781163 5656.49 176 HinP1I GCGC 921820 1379.01 725 HpaI GTTAAC 271843 406.67 2459 HpaII CCGG 889981 1331.38 751 HphI GGTGA 2682130 4012.37 249 Hpy188I TCNGA 5266587 7878.63 126 Hpy99I CGWCG 255938 382.87 2611 HpyAV CCTTC 2307990 3452.67 289 HpyCH4III ACNGT 6175488 9238.31 108 HpyCH4IV ACGT 1675895 2507.08 398 HpyCH4V TGCA 7874974 11780.69 84 KasI GGCGCC 48130 72.00 13888 KpnI GGTACC 79815 119.40 8375 MboI GATC 3148051 4709.37 212 MboII GAAGA 3437978 5143.09 194 MfeI CAATTG 209251 313.03 3194 MluCI AATT 7751699 11596.27 86 MluI ACGCGT 26604 39.80 25126 MlyI GAGTC 1993803 2982.66 335 MmeI TCCRAC 738338 1104.53 905 MnlI CCTC 11495055 17196.20 58 MscI TGGCCA 332581 497.53 2009 MseI TTAA 9303936 13918.36 71 MspA1I CMGCKG 1225692 1833.59 545 MspI CCGG 889981 1331.38 751 NaeI GCCGGC 60828 91.00 10989 NarI GGCGCC 48130 72.00 13888 NciI CCSGG 450937 674.59 1482 NcoI CCATGG 250151 374.22 2672 NdeI CATATG 370175 553.77 1805 NgoMIV GCCGGC 60828 91.00 10989 NheI GCTAGC 156560 234.21 4269 NlaIII CATG 6681042 9994.61 100 NmeAIII GCCGAG 218965 327.56 3052 NotI GCGGCCGC 1449 2.17 461328 NruI TCGCGA 12230 18.30 54657 NsiI ATGCAT 515305 770.88 1297 NspI RCATGY 1936346 2896.71 345 PacI TTAATTAA 42530 63.62 15717 PaeR7I CTCGAG 68763 102.87 9721 PciI ACATGT 707563 1058.49 944 PleI GAGTC 1993803 2982.66 335 PluTI GGCGCC 48130 72.00 13888 PmeI GTTTAAAC 18133 27.13 36864 PmlI CACGTG 123487 184.73 5413 PpuMI RGGWCCY 316339 473.23 2113 PsiI TTATAA 544273 814.21 1228 PspGI CCWGG 2277066 3406.41 293 PspOMI GGGCCC 107445 160.73 6221 PspXI VCTCGAGB 21224 31.75 31495 PstI CTGCAG 955579 1429.51 699 PvuI CGATCG 23775 35.57 28116 PvuII CAGCTG 909807 1361.04 734 RsaI GTAC 2960058 4428.14 225 RsrII CGGWCCG 12274 18.36 54461 SacI GAGCTC 299240 447.65 2233 SacII CCGCGG 36085 53.98 18524 SalI GTCGAC 77969 116.64 8573 SapI GCTCTTC 162428 242.99 4115 Sau3AI GATC 3148051 4709.37 212 Sau96I GGNCC 2093017 3131.08 319 SbfI CCTGCAGG 24598 36.80 27175 ScaI AGTACT 280642 419.83 2381 ScrFI CCNGG 2728003 4081.00 245 SexAI ACCWGGT 156102 233.52 4282 SfaNI GCATC 2014829 3014.11 331 SfcI CTRYAG 2043477 3056.97 327 SfoI GGCGCC 48130 72.00 13888 SgrAI CRCCGGYG 7757 11.60 86175 SmaI CCCGGG 57083 85.39 11710 SmlI CTYRAG 893548 1336.72 748 SnaBI TACGTA 61180 91.52 10926 SpeI ACTAGT 172744 258.42 3869 SphI GCATGC 271477 406.12 2462 SrfI GCCCGGGC 1652 2.47 404639 SspI AATATT 939137 1404.92 711 StuI AGGCCT 273340 408.91 2445 StyD4I CCNGG 2728003 4081.00 245 StyI CCWWGG 698307 1044.64 957 SwaI ATTTAAAT 51480 77.01 12984 TaqI TCGA 1013065 1515.51 659 TfiI GAWTC 1787360 2673.83 373 TseI GCWGC 3593656 5375.98 186 Tsp45I GTSAC 2705611 4047.50 247 TspMI CCCGGG 57083 85.39 11710 TspRI CASTG 5475933 8191.80 122 XbaI TCTAGA 199345 298.21 3353 XhoI CTCGAG 68763 102.87 9721 XmaI CCCGGG 57083 85.39 11710 ZraI GACGTC 112662 168.54 5933