# Larimichthys crocea genome, 648.391 Mbp of sequence in 10265 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 202556 312.40 3201 Acc65I GGTACC 78351 120.84 8275 AccI GTMKAC 566850 874.24 1143 AciI CCGC 2511045 3872.73 258 AclI AACGTT 193247 298.04 3355 AcuI CTGAAG 1059980 1634.79 611 AfeI AGCGCT 137767 212.48 4706 AflII CTTAAG 196200 302.60 3304 AflIII ACRYGT 1170628 1805.44 553 AgeI ACCGGT 75904 117.07 8542 AluI AGCT 6087225 9388.21 106 AlwI GGATC 1266430 1953.19 511 ApaI GGGCCC 85011 131.11 7627 ApaLI GTGCAC 299995 462.68 2161 ApeKI GCWGC 3452339 5324.47 187 ApoI RAATTY 1594391 2459.00 406 AscI GGCGCGCC 918 1.42 706307 AseI ATTAAT 691644 1066.71 937 AsiSI GCGATCGC 832 1.28 779315 AvaI CYCGRG 344409 531.18 1882 AvaII GGWCC 1090515 1681.88 594 AvrII CCTAGG 44334 68.38 14625 BaeGI GKGCMC 645185 995.06 1004 BamHI GGATCC 132246 203.96 4902 BanI GGYRCC 424439 654.60 1527 BanII GRGCYC 683964 1054.86 947 BbvI GCAGC 3452339 5324.47 187 BccI CCATC 2351152 3626.14 275 BceAI ACGGC 781306 1204.99 829 BciVI GTATCC 263410 406.25 2461 BclI TGATCA 441038 680.20 1470 BcoDI GTCTC 2439099 3761.77 265 BfuAI ACCTGC 706111 1089.02 918 BfuCI GATC 3027657 4669.50 214 BglII AGATCT 299082 461.27 2167 BlpI GCTNAGC 287936 444.08 2251 BmrI ACTGGG 452734 698.24 1432 BmtI GCTAGC 104318 160.89 6215 BpmI CTGGAG 889063 1371.18 729 BpuEI CTTGAG 522071 805.18 1241 BsaAI YACGTR 480984 741.81 1348 BsaHI GRCGYC 440819 679.87 1470 BsaI GGTCTC 371232 572.54 1746 BsaWI WCCGGW 301090 464.37 2153 BseRI GAGGAG 1397839 2155.86 463 BsgI GTGCAG 937847 1446.42 691 BsiEI CGRYCG 156207 240.91 4150 BsiHKAI GWGCWC 1135966 1751.98 570 BsiWI CGTACG 39571 61.03 16385 BsmAI GTCTC 2439099 3761.77 265 BsmBI CGTCTC 359215 554.01 1805 BsmFI GGGAC 1222315 1885.15 530 BsmI GAATGC 450274 694.45 1439 BsoBI CYCGRG 344409 531.18 1882 Bsp1286I GDGCHC 1770756 2731.00 366 BspCNI CTCAG 3316557 5115.06 195 BspDI ATCGAT 115380 177.95 5619 BspEI TCCGGA 60714 93.64 10679 BspHI TCATGA 475138 732.80 1364 BspMI ACCTGC 706111 1089.02 918 BspQI GCTCTTC 168503 259.88 3847 BsrBI CCGCTC 239915 370.02 2702 BsrFI RCCGGY 328638 506.85 1972 BsrGI TGTACA 572125 882.38 1133 BsrI ACTGG 2356910 3635.02 275 BssHII GCGCGC 39008 60.16 16621 BssSI CACGAG 270091 416.56 2400 BstBI TTCGAA 71937 110.95 9013 BstEII GGTNACC 156378 241.18 4146 BstNI CCWGG 1998184 3081.76 324 BstUI CGCG 519208 800.76 1248 BstYI RGATCY 807088 1244.76 803 BstZ17I GTATAC 153235 236.33 4231 Bsu36I CCTNAGG 219046 337.83 2960 BtgI CCRYGG 466750 719.86 1389 BtgZI GCGATG 220529 340.12 2940 BtsCI GGATG 2352895 3628.82 275 ClaI ATCGAT 115380 177.95 5619 CviAII CATG 6410939 9887.46 101 CviKI-1 RGCY 15416766 23776.97 42 CviQI GTAC 2899918 4472.49 223 DdeI CTNAG 4490767 6926.02 144 DpnII GATC 3027657 4669.50 214 DraI TTTAAA 1365991 2106.74 474 EaeI YGGCCR 509952 786.49 1271 EagI CGGCCG 50205 77.43 12914 EarI CTCTTC 958205 1477.82 676 EciI GGCGGA 172869 266.61 3750 Eco53kI GAGCTC 309353 477.11 2095 EcoO109I RGGNCCY 487106 751.25 1331 EcoRI GAATTC 207121 319.44 3130 EcoRV GATATC 197523 304.64 3282 FatI CATG 6410939 9887.46 101 FauI CCCGC 596999 920.74 1086 Fnu4HI GCNGC 4071959 6280.10 159 FokI GGATG 2352895 3628.82 275 FseI GGCCGGCC 2140 3.30 302986 FspI TGCGCA 91385 140.94 7095 HaeII RGCGCY 371268 572.60 1746 HaeIII GGCC 2233428 3444.57 290 HgaI GACGC 746786 1151.75 868 HhaI GCGC 1045193 1611.98 620 HincII GTYRAC 875678 1350.54 740 HindIII AAGCTT 360045 555.29 1800 HinfI GANTC 3469497 5350.94 186 HinP1I GCGC 1045193 1611.98 620 HpaI GTTAAC 264797 408.39 2448 HpaII CCGG 1197020 1846.14 541 HphI GGTGA 2469908 3809.29 262 Hpy188I TCNGA 4662425 7190.77 139 Hpy99I CGWCG 403118 621.72 1608 HpyAV CCTTC 2230706 3440.37 290 HpyCH4III ACNGT 5462026 8423.97 118 HpyCH4IV ACGT 2378678 3668.59 272 HpyCH4V TGCA 7350205 11336.08 88 KasI GGCGCC 55712 85.92 11638 KpnI GGTACC 78351 120.84 8275 MboI GATC 3027657 4669.50 214 MboII GAAGA 3425360 5282.86 189 MfeI CAATTG 174361 268.91 3718 MluCI AATT 6633160 10230.19 97 MluI ACGCGT 44909 69.26 14437 MlyI GAGTC 1803217 2781.07 359 MmeI TCCRAC 773634 1193.16 838 MnlI CCTC 10319499 15915.56 62 MscI TGGCCA 277246 427.59 2338 MseI TTAA 8544130 13177.44 75 MspA1I CMGCKG 1161738 1791.73 558 MspI CCGG 1197020 1846.14 541 NaeI GCCGGC 78500 121.07 8259 NarI GGCGCC 55712 85.92 11638 NciI CCSGG 566479 873.67 1144 NcoI CCATGG 226018 348.58 2868 NdeI CATATG 315990 487.35 2051 NgoMIV GCCGGC 78500 121.07 8259 NheI GCTAGC 104318 160.89 6215 NlaIII CATG 6410939 9887.46 101 NmeAIII GCCGAG 218564 337.09 2966 NotI GCGGCCGC 3116 4.81 208084 NruI TCGCGA 20563 31.71 31531 NsiI ATGCAT 512460 790.36 1265 NspI RCATGY 1908018 2942.70 339 PacI TTAATTAA 46263 71.35 14015 PaeR7I CTCGAG 112053 172.82 5786 PciI ACATGT 690218 1064.51 939 PleI GAGTC 1803217 2781.07 359 PluTI GGCGCC 55712 85.92 11638 PmeI GTTTAAAC 19100 29.46 33947 PmlI CACGTG 177429 273.65 3654 PpuMI RGGWCCY 273348 421.58 2372 PsiI TTATAA 511399 788.72 1267 PspGI CCWGG 1998184 3081.76 324 PspOMI GGGCCC 85011 131.11 7627 PspXI VCTCGAGB 35132 54.18 18455 PstI CTGCAG 870321 1342.28 745 PvuI CGATCG 28500 43.95 22750 PvuII CAGCTG 797096 1229.35 813 RsaI GTAC 2899918 4472.49 223 RsrII CGGWCCG 19499 30.07 33252 SacI GAGCTC 309353 477.11 2095 SacII CCGCGG 40548 62.54 15990 SalI GTCGAC 95500 147.29 6789 SapI GCTCTTC 168503 259.88 3847 Sau3AI GATC 3027657 4669.50 214 Sau96I GGNCC 1953025 3012.11 331 SbfI CCTGCAGG 23702 36.56 27355 ScaI AGTACT 247558 381.80 2619 ScrFI CCNGG 2564663 3955.43 252 SexAI ACCWGGT 126487 195.08 5126 SfaNI GCATC 1905470 2938.77 340 SfcI CTRYAG 1841041 2839.40 352 SfoI GGCGCC 55712 85.92 11638 SgrAI CRCCGGYG 9222 14.22 70309 SmaI CCCGGG 66572 102.67 9739 SmlI CTYRAG 830324 1280.59 780 SnaBI TACGTA 83304 128.48 7783 SpeI ACTAGT 165627 255.44 3914 SphI GCATGC 284088 438.14 2282 SrfI GCCCGGGC 2291 3.53 283016 SspI AATATT 857348 1322.27 756 StuI AGGCCT 229074 353.30 2830 StyD4I CCNGG 2564663 3955.43 252 StyI CCWWGG 612023 943.91 1059 SwaI ATTTAAAT 52070 80.31 12452 TaqI TCGA 1436722 2215.83 451 TfiI GAWTC 1666280 2569.87 389 TseI GCWGC 3452339 5324.47 187 Tsp45I GTSAC 2630720 4057.31 246 TspMI CCCGGG 66572 102.67 9739 TspRI CASTG 4365571 6732.93 148 XbaI TCTAGA 178736 275.66 3627 XhoI CTCGAG 112053 172.82 5786 XmaI CCCGGG 66572 102.67 9739 ZraI GACGTC 202556 312.40 3201