# Haplochromis burtoni genome, 831.412 Mbp of sequence in 8001 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 114716 137.98 7247 Acc65I GGTACC 100308 120.65 8288 AccI GTMKAC 577811 694.98 1438 AciI CCGC 2440122 2934.91 340 AclI AACGTT 180991 217.69 4593 AcuI CTGAAG 1232623 1482.57 674 AfeI AGCGCT 197316 237.33 4213 AflII CTTAAG 258746 311.21 3213 AflIII ACRYGT 1134324 1364.34 732 AgeI ACCGGT 94444 113.59 8803 AluI AGCT 7160532 8612.50 116 AlwI GGATC 1404698 1689.53 591 ApaI GGGCCC 102194 122.92 8135 ApaLI GTGCAC 355011 427.00 2341 ApeKI GCWGC 3829964 4606.58 217 ApoI RAATTY 2224422 2675.48 373 AscI GGCGCGCC 747 0.90 1113000 AseI ATTAAT 756704 910.14 1098 AsiSI GCGATCGC 1160 1.40 716734 AvaI CYCGRG 374959 450.99 2217 AvaII GGWCC 1209075 1454.24 687 AvrII CCTAGG 67347 81.00 12345 BaeGI GKGCMC 751972 904.45 1105 BamHI GGATCC 144784 174.14 5742 BanI GGYRCC 479600 576.85 1733 BanII GRGCYC 762621 917.26 1090 BbvI GCAGC 3829964 4606.58 217 BccI CCATC 2653319 3191.34 313 BceAI ACGGC 756788 910.24 1098 BciVI GTATCC 299989 360.82 2771 BclI TGATCA 474795 571.07 1751 BcoDI GTCTC 2349404 2825.80 353 BfuAI ACCTGC 838806 1008.89 991 BfuCI GATC 3291630 3959.09 252 BglII AGATCT 327028 393.34 2542 BlpI GCTNAGC 313004 376.47 2656 BmrI ACTGGG 606489 729.47 1370 BmtI GCTAGC 177571 213.58 4682 BpmI CTGGAG 985848 1185.75 843 BpuEI CTTGAG 597523 718.68 1391 BsaAI YACGTR 499666 600.99 1663 BsaHI GRCGYC 328803 395.48 2528 BsaI GGTCTC 403957 485.87 2058 BsaWI WCCGGW 295041 354.87 2817 BseRI GAGGAG 1154953 1389.15 719 BsgI GTGCAG 1102915 1326.56 753 BsiEI CGRYCG 152416 183.32 5454 BsiHKAI GWGCWC 1290660 1552.37 644 BsiWI CGTACG 28535 34.32 29136 BsmAI GTCTC 2349404 2825.80 353 BsmBI CGTCTC 308913 371.55 2691 BsmFI GGGAC 1320652 1588.45 629 BsmI GAATGC 553320 665.52 1502 BsoBI CYCGRG 374959 450.99 2217 Bsp1286I GDGCHC 2030766 2442.55 409 BspCNI CTCAG 3732806 4489.72 222 BspDI ATCGAT 116597 140.24 7130 BspEI TCCGGA 51784 62.28 16055 BspHI TCATGA 443225 533.10 1875 BspMI ACCTGC 838806 1008.89 991 BspQI GCTCTTC 201612 242.49 4123 BsrBI CCGCTC 216112 259.93 3847 BsrFI RCCGGY 324550 390.36 2561 BsrGI TGTACA 553312 665.51 1502 BsrI ACTGG 2938013 3533.76 282 BssHII GCGCGC 47338 56.94 17563 BssSI CACGAG 280972 337.95 2959 BstBI TTCGAA 72716 87.46 11433 BstEII GGTNACC 175202 210.73 4745 BstNI CCWGG 2275082 2736.41 365 BstUI CGCG 555899 668.62 1495 BstYI RGATCY 902350 1085.32 921 BstZ17I GTATAC 164489 197.84 5054 Bsu36I CCTNAGG 234608 282.18 3543 BtgI CCRYGG 464259 558.40 1790 BtgZI GCGATG 221120 265.96 3760 BtsCI GGATG 2617214 3147.92 317 ClaI ATCGAT 116597 140.24 7130 CviAII CATG 6600347 7938.72 125 CviKI-1 RGCY 17979324 21625.06 46 CviQI GTAC 2980600 3584.99 278 DdeI CTNAG 5305765 6381.63 156 DpnII GATC 3291630 3959.09 252 DraI TTTAAA 1836101 2208.41 452 EaeI YGGCCR 547570 658.60 1518 EagI CGGCCG 41512 49.93 20028 EarI CTCTTC 999318 1201.95 831 EciI GGCGGA 154951 186.37 5365 Eco53kI GAGCTC 317282 381.62 2620 EcoO109I RGGNCCY 600275 722.00 1385 EcoRI GAATTC 264874 318.58 3138 EcoRV GATATC 219281 263.75 3791 FatI CATG 6600347 7938.72 125 FauI CCCGC 571367 687.23 1455 Fnu4HI GCNGC 4410440 5304.76 188 FokI GGATG 2617214 3147.92 317 FseI GGCCGGCC 2254 2.71 368860 FspI TGCGCA 119598 143.85 6951 HaeII RGCGCY 461748 555.38 1800 HaeIII GGCC 2573057 3094.81 323 HgaI GACGC 687401 826.79 1209 HhaI GCGC 1299617 1563.15 639 HincII GTYRAC 838128 1008.08 991 HindIII AAGCTT 505079 607.50 1646 HinfI GANTC 3783736 4550.98 219 HinP1I GCGC 1299617 1563.15 639 HpaI GTTAAC 292073 351.30 2846 HpaII CCGG 1135241 1365.44 732 HphI GGTGA 2645881 3182.40 314 Hpy188I TCNGA 5063106 6089.77 164 Hpy99I CGWCG 304848 366.66 2727 HpyAV CCTTC 2589247 3114.28 321 HpyCH4III ACNGT 5728465 6890.05 145 HpyCH4IV ACGT 2140365 2574.37 388 HpyCH4V TGCA 8907157 10713.29 93 KasI GGCGCC 62824 75.56 13233 KpnI GGTACC 100308 120.65 8288 MboI GATC 3291630 3959.09 252 MboII GAAGA 3805067 4576.63 218 MfeI CAATTG 209392 251.85 3970 MluCI AATT 8373622 10071.57 99 MluI ACGCGT 46423 55.84 17909 MlyI GAGTC 1876731 2257.28 443 MmeI TCCRAC 760064 914.19 1093 MnlI CCTC 10361983 12463.12 80 MscI TGGCCA 333256 400.83 2494 MseI TTAA 10535481 12671.80 78 MspA1I CMGCKG 1327274 1596.41 626 MspI CCGG 1135241 1365.44 732 NaeI GCCGGC 69143 83.16 12024 NarI GGCGCC 62824 75.56 13233 NciI CCSGG 551480 663.31 1507 NcoI CCATGG 223936 269.34 3712 NdeI CATATG 373892 449.71 2223 NgoMIV GCCGGC 69143 83.16 12024 NheI GCTAGC 177571 213.58 4682 NlaIII CATG 6600347 7938.72 125 NmeAIII GCCGAG 197100 237.07 4218 NotI GCGGCCGC 1951 2.35 426146 NruI TCGCGA 25070 30.15 33163 NsiI ATGCAT 594628 715.20 1398 NspI RCATGY 2015667 2424.39 412 PacI TTAATTAA 48231 58.01 17238 PaeR7I CTCGAG 114754 138.02 7245 PciI ACATGT 682164 820.49 1218 PleI GAGTC 1876731 2257.28 443 PluTI GGCGCC 62824 75.56 13233 PmeI GTTTAAAC 23442 28.20 35466 PmlI CACGTG 191052 229.79 4351 PpuMI RGGWCCY 340273 409.27 2443 PsiI TTATAA 627911 755.23 1324 PspGI CCWGG 2275082 2736.41 365 PspOMI GGGCCC 102194 122.92 8135 PspXI VCTCGAGB 35521 42.72 23406 PstI CTGCAG 972801 1170.06 854 PvuI CGATCG 36751 44.20 22622 PvuII CAGCTG 960087 1154.77 865 RsaI GTAC 2980600 3584.99 278 RsrII CGGWCCG 25636 30.83 32431 SacI GAGCTC 317282 381.62 2620 SacII CCGCGG 35584 42.80 23364 SalI GTCGAC 73903 88.89 11250 SapI GCTCTTC 201612 242.49 4123 Sau3AI GATC 3291630 3959.09 252 Sau96I GGNCC 2254463 2711.61 368 SbfI CCTGCAGG 29320 35.27 28356 ScaI AGTACT 273010 328.37 3045 ScrFI CCNGG 2826562 3399.71 294 SexAI ACCWGGT 149542 179.87 5559 SfaNI GCATC 2288303 2752.31 363 SfcI CTRYAG 1992352 2396.35 417 SfoI GGCGCC 62824 75.56 13233 SgrAI CRCCGGYG 8951 10.77 92884 SmaI CCCGGG 70854 85.22 11734 SmlI CTYRAG 971023 1167.92 856 SnaBI TACGTA 77582 93.31 10716 SpeI ACTAGT 192298 231.29 4323 SphI GCATGC 341590 410.86 2433 SrfI GCCCGGGC 2106 2.53 394782 SspI AATATT 963910 1159.37 862 StuI AGGCCT 278834 335.37 2981 StyD4I CCNGG 2826562 3399.71 294 StyI CCWWGG 737701 887.29 1127 SwaI ATTTAAAT 65168 78.38 12757 TaqI TCGA 1382166 1662.43 601 TfiI GAWTC 1907005 2293.70 435 TseI GCWGC 3829964 4606.58 217 Tsp45I GTSAC 2726198 3279.00 304 TspMI CCCGGG 70854 85.22 11734 TspRI CASTG 4985052 5995.89 166 XbaI TCTAGA 197905 238.03 4201 XhoI CTCGAG 114754 138.02 7245 XmaI CCCGGG 70854 85.22 11734 ZraI GACGTC 114716 137.98 7247