# Gasterosteus aculeatus genome, 446.611 Mbp of sequence in 16957 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 179055 400.92 2494 Acc65I GGTACC 74928 167.77 5960 AccI GTMKAC 403980 904.55 1105 AciI CCGC 3982517 8917.20 112 AclI AACGTT 219528 491.54 2034 AcuI CTGAAG 707163 1583.40 631 AfeI AGCGCT 163559 366.22 2730 AflII CTTAAG 137517 307.91 3247 AflIII ACRYGT 950748 2128.81 469 AgeI ACCGGT 101691 227.69 4391 AluI AGCT 3805721 8521.34 117 AlwI GGATC 1136062 2543.74 393 ApaI GGGCCC 122102 273.40 3657 ApaLI GTGCAC 246534 552.01 1811 ApeKI GCWGC 2726686 6105.28 163 ApoI RAATTY 914330 2047.26 488 AscI GGCGCGCC 2103 4.71 212368 AseI ATTAAT 411237 920.80 1086 AsiSI GCGATCGC 1936 4.33 230687 AvaI CYCGRG 477102 1068.27 936 AvaII GGWCC 1155189 2586.57 386 AvrII CCTAGG 26270 58.82 17000 BaeGI GKGCMC 590863 1322.99 755 BamHI GGATCC 141740 317.37 3150 BanI GGYRCC 439581 984.26 1015 BanII GRGCYC 670950 1502.31 665 BbvI GCAGC 2726686 6105.28 163 BccI CCATC 1835140 4109.04 243 BceAI ACGGC 1109433 2484.12 402 BciVI GTATCC 195126 436.90 2288 BclI TGATCA 274838 615.39 1624 BcoDI GTCTC 1906790 4269.47 234 BfuAI ACCTGC 569029 1274.10 784 BfuCI GATC 2308709 5169.40 193 BglII AGATCT 186148 416.80 2399 BlpI GCTNAGC 213202 477.38 2094 BmrI ACTGGG 346748 776.40 1287 BmtI GCTAGC 90484 202.60 4935 BpmI CTGGAG 683257 1529.87 653 BpuEI CTTGAG 371256 831.27 1202 BsaAI YACGTR 501774 1123.52 890 BsaHI GRCGYC 556403 1245.83 802 BsaI GGTCTC 349380 782.29 1278 BsaWI WCCGGW 399157 893.75 1118 BseRI GAGGAG 1156207 2588.85 386 BsgI GTGCAG 675833 1513.25 660 BsiEI CGRYCG 306239 685.70 1458 BsiHKAI GWGCWC 887921 1988.13 502 BsiWI CGTACG 51946 116.31 8597 BsmAI GTCTC 1906790 4269.47 234 BsmBI CGTCTC 463885 1038.68 962 BsmFI GGGAC 1365664 3057.84 327 BsmI GAATGC 377947 846.26 1181 BsoBI CYCGRG 477102 1068.27 936 Bsp1286I GDGCHC 1545905 3461.41 288 BspCNI CTCAG 2083161 4664.38 214 BspDI ATCGAT 104071 233.02 4291 BspEI TCCGGA 89101 199.50 5012 BspHI TCATGA 267405 598.74 1670 BspMI ACCTGC 569029 1274.10 784 BspQI GCTCTTC 136777 306.26 3265 BsrBI CCGCTC 344171 770.63 1297 BsrFI RCCGGY 507995 1137.44 879 BsrGI TGTACA 318445 713.03 1402 BsrI ACTGG 1574618 3525.71 283 BssHII GCGCGC 102345 229.16 4363 BssSI CACGAG 277965 622.39 1606 BstBI TTCGAA 60128 134.63 7427 BstEII GGTNACC 136358 305.32 3275 BstNI CCWGG 1560851 3494.88 286 BstUI CGCG 1244037 2785.51 359 BstYI RGATCY 633999 1419.58 704 BstZ17I GTATAC 88973 199.22 5019 Bsu36I CCTNAGG 155827 348.91 2866 BtgI CCRYGG 558109 1249.65 800 BtgZI GCGATG 256892 575.20 1738 BtsCI GGATG 1821320 4078.09 245 ClaI ATCGAT 104071 233.02 4291 CviAII CATG 3896991 8725.70 114 CviKI-1 RGCY 11874580 26588.21 37 CviQI GTAC 1946775 4359.00 229 DdeI CTNAG 2815993 6305.25 158 DpnII GATC 2308709 5169.40 193 DraI TTTAAA 843207 1888.01 529 EaeI YGGCCR 591411 1324.22 755 EagI CGGCCG 122616 274.55 3642 EarI CTCTTC 685441 1534.76 651 EciI GGCGGA 291247 652.13 1533 Eco53kI GAGCTC 235193 526.62 1898 EcoO109I RGGNCCY 543172 1216.21 822 EcoRI GAATTC 161899 362.51 2758 EcoRV GATATC 126360 282.93 3534 FatI CATG 3896991 8725.70 114 FauI CCCGC 960960 2151.67 464 Fnu4HI GCNGC 3856352 8634.70 115 FokI GGATG 1821320 4078.09 245 FseI GGCCGGCC 5185 11.61 86135 FspI TGCGCA 105460 236.13 4234 HaeII RGCGCY 543899 1217.84 821 HaeIII GGCC 2486307 5567.06 179 HgaI GACGC 1040167 2329.02 429 HhaI GCGC 1715403 3840.93 260 HincII GTYRAC 664383 1487.61 672 HindIII AAGCTT 235830 528.04 1893 HinfI GANTC 2716417 6082.29 164 HinP1I GCGC 1715403 3840.93 260 HpaI GTTAAC 174221 390.10 2563 HpaII CCGG 1881754 4213.41 237 HphI GGTGA 1834062 4106.62 243 Hpy188I TCNGA 3188168 7138.58 140 Hpy99I CGWCG 679513 1521.49 657 HpyAV CCTTC 1967441 4405.27 227 HpyCH4III ACNGT 3238957 7252.30 137 HpyCH4IV ACGT 2435805 5453.98 183 HpyCH4V TGCA 5115581 11454.23 87 KasI GGCGCC 115152 257.84 3878 KpnI GGTACC 74928 167.77 5960 MboI GATC 2308709 5169.40 193 MboII GAAGA 2505531 5610.10 178 MfeI CAATTG 181124 405.55 2465 MluCI AATT 4316521 9665.06 103 MluI ACGCGT 93104 208.47 4796 MlyI GAGTC 1391625 3115.97 320 MmeI TCCRAC 685368 1534.60 651 MnlI CCTC 8766811 19629.64 50 MscI TGGCCA 192216 430.39 2323 MseI TTAA 5384203 12055.69 82 MspA1I CMGCKG 1088040 2436.22 410 MspI CCGG 1881754 4213.41 237 NaeI GCCGGC 157286 352.18 2839 NarI GGCGCC 115152 257.84 3878 NciI CCSGG 982099 2199.00 454 NcoI CCATGG 162390 363.61 2750 NdeI CATATG 177328 397.05 2518 NgoMIV GCCGGC 157286 352.18 2839 NheI GCTAGC 90484 202.60 4935 NlaIII CATG 3896991 8725.70 114 NmeAIII GCCGAG 313850 702.74 1423 NotI GCGGCCGC 5457 12.22 81841 NruI TCGCGA 34221 76.62 13050 NsiI ATGCAT 318210 712.50 1403 NspI RCATGY 1146138 2566.30 389 PacI TTAATTAA 24914 55.78 17926 PaeR7I CTCGAG 91078 203.93 4903 PciI ACATGT 407840 913.19 1095 PleI GAGTC 1391625 3115.97 320 PluTI GGCGCC 115152 257.84 3878 PmeI GTTTAAAC 11612 26.00 38461 PmlI CACGTG 206247 461.80 2165 PpuMI RGGWCCY 282666 632.91 1579 PsiI TTATAA 308709 691.23 1446 PspGI CCWGG 1560851 3494.88 286 PspOMI GGGCCC 122102 273.40 3657 PspXI VCTCGAGB 28643 64.13 15592 PstI CTGCAG 635255 1422.39 703 PvuI CGATCG 47199 105.68 9462 PvuII CAGCTG 510192 1142.36 875 RsaI GTAC 1946775 4359.00 229 RsrII CGGWCCG 47042 105.33 9493 SacI GAGCTC 235193 526.62 1898 SacII CCGCGG 113536 254.22 3933 SalI GTCGAC 89212 199.75 5006 SapI GCTCTTC 136777 306.26 3265 Sau3AI GATC 2308709 5169.40 193 Sau96I GGNCC 2286612 5119.92 195 SbfI CCTGCAGG 22802 51.06 19586 ScaI AGTACT 136019 304.56 3283 ScrFI CCNGG 2542950 5693.88 175 SexAI ACCWGGT 104679 234.39 4266 SfaNI GCATC 1519937 3403.27 293 SfcI CTRYAG 1151974 2579.37 387 SfoI GGCGCC 115152 257.84 3878 SgrAI CRCCGGYG 20266 45.38 22037 SmaI CCCGGG 132884 297.54 3360 SmlI CTYRAG 599851 1343.12 744 SnaBI TACGTA 72624 162.61 6149 SpeI ACTAGT 105282 235.74 4242 SphI GCATGC 185044 414.33 2413 SrfI GCCCGGGC 3439 7.70 129866 SspI AATATT 533103 1193.66 837 StuI AGGCCT 190727 427.05 2341 StyD4I CCNGG 2542950 5693.88 175 StyI CCWWGG 461964 1034.38 966 SwaI ATTTAAAT 33004 73.90 13532 TaqI TCGA 1297061 2904.23 344 TfiI GAWTC 1324792 2966.32 337 TseI GCWGC 2726686 6105.28 163 Tsp45I GTSAC 1862166 4169.55 239 TspMI CCCGGG 132884 297.54 3360 TspRI CASTG 2472064 5535.16 180 XbaI TCTAGA 110307 246.99 4048 XhoI CTCGAG 91078 203.93 4903 XmaI CCCGGG 132884 297.54 3360 ZraI GACGTC 179055 400.92 2494