# Gadus morhua genome, 824.311 Mbp of sequence in 427427 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 187676 227.68 4392 Acc65I GGTACC 119958 145.53 6871 AccI GTMKAC 624006 757.00 1320 AciI CCGC 4788382 5808.95 172 AclI AACGTT 248416 301.36 3318 AcuI CTGAAG 765747 928.95 1076 AfeI AGCGCT 199318 241.80 4135 AflII CTTAAG 172470 209.23 4779 AflIII ACRYGT 1100712 1335.31 748 AgeI ACCGGT 129509 157.11 6364 AluI AGCT 4200251 5095.47 196 AlwI GGATC 1379222 1673.18 597 ApaI GGGCCC 252301 306.07 3267 ApaLI GTGCAC 292596 354.96 2817 ApeKI GCWGC 2634435 3195.92 312 ApoI RAATTY 1020673 1238.21 807 AscI GGCGCGCC 3087 3.74 267026 AseI ATTAAT 554021 672.10 1487 AsiSI GCGATCGC 2490 3.02 331048 AvaI CYCGRG 542461 658.08 1519 AvaII GGWCC 1613043 1956.84 511 AvrII CCTAGG 98901 119.98 8334 BaeGI GKGCMC 873711 1059.93 943 BamHI GGATCC 171734 208.34 4799 BanI GGYRCC 585025 709.71 1409 BanII GRGCYC 957054 1161.03 861 BbvI GCAGC 2634435 3195.92 312 BccI CCATC 2476097 3003.84 332 BceAI ACGGC 1328831 1612.05 620 BciVI GTATCC 286309 347.33 2879 BclI TGATCA 324954 394.21 2536 BcoDI GTCTC 2438595 2958.34 338 BfuAI ACCTGC 590977 716.93 1394 BfuCI GATC 2817464 3417.96 292 BglII AGATCT 221654 268.90 3718 BlpI GCTNAGC 242357 294.01 3401 BmrI ACTGGG 514342 623.97 1602 BmtI GCTAGC 194759 236.27 4232 BpmI CTGGAG 847755 1028.44 972 BpuEI CTTGAG 452159 548.53 1823 BsaAI YACGTR 660284 801.01 1248 BsaHI GRCGYC 631894 766.57 1304 BsaI GGTCTC 467491 567.13 1763 BsaWI WCCGGW 502125 609.14 1641 BseRI GAGGAG 1928767 2339.85 427 BsgI GTGCAG 655444 795.14 1257 BsiEI CGRYCG 413453 501.57 1993 BsiHKAI GWGCWC 1019445 1236.72 808 BsiWI CGTACG 137635 166.97 5989 BsmAI GTCTC 2438595 2958.34 338 BsmBI CGTCTC 506541 614.50 1627 BsmFI GGGAC 1719759 2086.30 479 BsmI GAATGC 487166 591.00 1692 BsoBI CYCGRG 542461 658.08 1519 Bsp1286I GDGCHC 2047013 2483.30 402 BspCNI CTCAG 2415203 2929.97 341 BspDI ATCGAT 159400 193.37 5171 BspEI TCCGGA 108832 132.03 7574 BspHI TCATGA 325867 395.32 2529 BspMI ACCTGC 590977 716.93 1394 BspQI GCTCTTC 156099 189.37 5280 BsrBI CCGCTC 390828 474.13 2109 BsrFI RCCGGY 602863 731.35 1367 BsrGI TGTACA 428408 519.72 1924 BsrI ACTGG 2004150 2431.30 411 BssHII GCGCGC 137632 166.97 5989 BssSI CACGAG 253000 306.92 3258 BstBI TTCGAA 111456 135.21 7395 BstEII GGTNACC 212038 257.23 3887 BstNI CCWGG 2546609 3089.38 323 BstUI CGCG 1442423 1749.85 571 BstYI RGATCY 772202 936.78 1067 BstZ17I GTATAC 172825 209.66 4769 Bsu36I CCTNAGG 201170 244.05 4097 BtgI CCRYGG 809281 981.77 1018 BtgZI GCGATG 317695 385.41 2594 BtsCI GGATG 2343273 2842.70 351 ClaI ATCGAT 159400 193.37 5171 CviAII CATG 5464778 6629.51 150 CviKI-1 RGCY 15621565 18951.05 52 CviQI GTAC 2883597 3498.19 285 DdeI CTNAG 3442617 4176.36 239 DpnII GATC 2817464 3417.96 292 DraI TTTAAA 832892 1010.41 989 EaeI YGGCCR 871825 1057.64 945 EagI CGGCCG 149239 181.05 5523 EarI CTCTTC 898816 1090.38 917 EciI GGCGGA 349208 423.64 2360 Eco53kI GAGCTC 258300 313.35 3191 EcoO109I RGGNCCY 945930 1147.54 871 EcoRI GAATTC 189440 229.82 4351 EcoRV GATATC 186722 226.52 4414 FatI CATG 5464778 6629.51 150 FauI CCCGC 1310305 1589.58 629 Fnu4HI GCNGC 3818959 4632.91 215 FokI GGATG 2343273 2842.70 351 FseI GGCCGGCC 9195 11.15 89647 FspI TGCGCA 147479 178.91 5589 HaeII RGCGCY 653170 792.38 1262 HaeIII GGCC 3732657 4528.21 220 HgaI GACGC 1186739 1439.67 694 HhaI GCGC 2119769 2571.56 388 HincII GTYRAC 887701 1076.90 928 HindIII AAGCTT 233175 282.87 3535 HinfI GANTC 3115689 3779.75 264 HinP1I GCGC 2119769 2571.56 388 HpaI GTTAAC 251732 305.38 3274 HpaII CCGG 2380432 2887.78 346 HphI GGTGA 2333264 2830.56 353 Hpy188I TCNGA 3871736 4696.94 212 Hpy99I CGWCG 856612 1039.19 962 HpyAV CCTTC 2571838 3119.98 320 HpyCH4III ACNGT 3981498 4830.09 207 HpyCH4IV ACGT 2785064 3378.66 295 HpyCH4V TGCA 5880152 7133.41 140 KasI GGCGCC 138989 168.61 5930 KpnI GGTACC 119958 145.53 6871 MboI GATC 2817464 3417.96 292 MboII GAAGA 2889114 3504.88 285 MfeI CAATTG 243257 295.10 3388 MluCI AATT 5229981 6344.67 157 MluI ACGCGT 105697 128.22 7798 MlyI GAGTC 1571037 1905.88 524 MmeI TCCRAC 852487 1034.18 966 MnlI CCTC 11930189 14472.92 69 MscI TGGCCA 315108 382.27 2615 MseI TTAA 6351212 7704.87 129 MspA1I CMGCKG 1075583 1304.83 766 MspI CCGG 2380432 2887.78 346 NaeI GCCGGC 182188 221.02 4524 NarI GGCGCC 138989 168.61 5930 NciI CCSGG 1361833 1652.09 605 NcoI CCATGG 309949 376.01 2659 NdeI CATATG 264695 321.11 3114 NgoMIV GCCGGC 182188 221.02 4524 NheI GCTAGC 194759 236.27 4232 NlaIII CATG 5464778 6629.51 150 NmeAIII GCCGAG 289806 351.57 2844 NotI GCGGCCGC 6498 7.88 126856 NruI TCGCGA 53076 64.39 15530 NsiI ATGCAT 536932 651.37 1535 NspI RCATGY 1651807 2003.86 499 PacI TTAATTAA 32041 38.87 25726 PaeR7I CTCGAG 88592 107.47 9304 PciI ACATGT 492603 597.59 1673 PleI GAGTC 1571037 1905.88 524 PluTI GGCGCC 138989 168.61 5930 PmeI GTTTAAAC 14042 17.03 58703 PmlI CACGTG 201402 244.33 4092 PpuMI RGGWCCY 437758 531.06 1883 PsiI TTATAA 442770 537.14 1861 PspGI CCWGG 2546609 3089.38 323 PspOMI GGGCCC 252301 306.07 3267 PspXI VCTCGAGB 27308 33.13 30185 PstI CTGCAG 542779 658.46 1518 PvuI CGATCG 60446 73.33 13637 PvuII CAGCTG 465365 564.55 1771 RsaI GTAC 2883597 3498.19 285 RsrII CGGWCCG 50475 61.23 16331 SacI GAGCTC 258300 313.35 3191 SacII CCGCGG 127309 154.44 6474 SalI GTCGAC 110284 133.79 7474 SapI GCTCTTC 156099 189.37 5280 Sau3AI GATC 2817464 3417.96 292 Sau96I GGNCC 3492591 4236.98 236 SbfI CCTGCAGG 20000 24.26 41215 ScaI AGTACT 200919 243.74 4102 ScrFI CCNGG 3908442 4741.46 210 SexAI ACCWGGT 162454 197.08 5074 SfaNI GCATC 1745634 2117.69 472 SfcI CTRYAG 1323908 1606.08 622 SfoI GGCGCC 138989 168.61 5930 SgrAI CRCCGGYG 20504 24.87 40202 SmaI CCCGGG 201959 245.00 4081 SmlI CTYRAG 713221 865.23 1155 SnaBI TACGTA 170994 207.44 4820 SpeI ACTAGT 159063 192.96 5182 SphI GCATGC 325347 394.69 2533 SrfI GCCCGGGC 7016 8.51 117490 SspI AATATT 638361 774.42 1291 StuI AGGCCT 332292 403.11 2480 StyD4I CCNGG 3908442 4741.46 210 StyI CCWWGG 868012 1053.02 949 SwaI ATTTAAAT 37412 45.39 22033 TaqI TCGA 1780869 2160.43 462 TfiI GAWTC 1544652 1873.87 533 TseI GCWGC 2634435 3195.92 312 Tsp45I GTSAC 1937945 2350.99 425 TspMI CCCGGG 201959 245.00 4081 TspRI CASTG 2993884 3631.98 275 XbaI TCTAGA 188492 228.67 4373 XhoI CTCGAG 88592 107.47 9304 XmaI CCCGGG 201959 245.00 4081 ZraI GACGTC 187676 227.68 4392