# Fundulus heteroclitus genome, 1021.882 Mbp of sequence in 10179 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 210202 205.70 4861 Acc65I GGTACC 149383 146.18 6840 AccI GTMKAC 729600 713.98 1400 AciI CCGC 4600209 4501.70 222 AclI AACGTT 370667 362.73 2756 AcuI CTGAAG 1554959 1521.66 657 AfeI AGCGCT 259808 254.24 3933 AflII CTTAAG 334019 326.87 3059 AflIII ACRYGT 1456793 1425.60 701 AgeI ACCGGT 142559 139.51 7168 AluI AGCT 9099644 8904.79 112 AlwI GGATC 2169361 2122.91 471 ApaI GGGCCC 162797 159.31 6277 ApaLI GTGCAC 345005 337.62 2961 ApeKI GCWGC 5174760 5063.95 197 ApoI RAATTY 2961323 2897.91 345 AscI GGCGCGCC 2249 2.20 454371 AseI ATTAAT 1053210 1030.66 970 AsiSI GCGATCGC 1684 1.65 606818 AvaI CYCGRG 457255 447.46 2234 AvaII GGWCC 2044395 2000.62 499 AvrII CCTAGG 99669 97.53 10252 BaeGI GKGCMC 874059 855.34 1169 BamHI GGATCC 237556 232.47 4301 BanI GGYRCC 737220 721.43 1386 BanII GRGCYC 1052659 1030.12 970 BbvI GCAGC 5174760 5063.95 197 BccI CCATC 3756379 3675.94 272 BceAI ACGGC 1393086 1363.26 733 BciVI GTATCC 351949 344.41 2903 BclI TGATCA 612043 598.94 1669 BcoDI GTCTC 3050697 2985.37 334 BfuAI ACCTGC 1096727 1073.24 931 BfuCI GATC 4764182 4662.16 214 BglII AGATCT 469154 459.11 2178 BlpI GCTNAGC 417695 408.75 2446 BmrI ACTGGG 773480 756.92 1321 BmtI GCTAGC 187634 183.62 5446 BpmI CTGGAG 1432594 1401.92 713 BpuEI CTTGAG 753230 737.10 1356 BsaAI YACGTR 574907 562.60 1777 BsaHI GRCGYC 630881 617.37 1619 BsaI GGTCTC 568114 555.95 1798 BsaWI WCCGGW 564969 552.87 1808 BseRI GAGGAG 1579938 1546.11 646 BsgI GTGCAG 1228933 1202.62 831 BsiEI CGRYCG 300078 293.65 3405 BsiHKAI GWGCWC 1454793 1423.64 702 BsiWI CGTACG 56906 55.69 17957 BsmAI GTCTC 3050697 2985.37 334 BsmBI CGTCTC 527367 516.07 1937 BsmFI GGGAC 1962178 1920.16 520 BsmI GAATGC 737763 721.96 1385 BsoBI CYCGRG 457255 447.46 2234 Bsp1286I GDGCHC 2455648 2403.06 416 BspCNI CTCAG 4651840 4552.23 219 BspDI ATCGAT 172585 168.89 5921 BspEI TCCGGA 113767 111.33 8982 BspHI TCATGA 583117 570.63 1752 BspMI ACCTGC 1096727 1073.24 931 BspQI GCTCTTC 248354 243.04 4114 BsrBI CCGCTC 409518 400.75 2495 BsrFI RCCGGY 589162 576.55 1734 BsrGI TGTACA 610832 597.75 1672 BsrI ACTGG 3569298 3492.87 286 BssHII GCGCGC 82060 80.30 12452 BssSI CACGAG 284284 278.20 3594 BstBI TTCGAA 103740 101.52 9850 BstEII GGTNACC 230882 225.94 4425 BstNI CCWGG 3444395 3370.64 296 BstUI CGCG 1008130 986.54 1013 BstYI RGATCY 1398262 1368.32 730 BstZ17I GTATAC 185031 181.07 5522 Bsu36I CCTNAGG 321367 314.49 3179 BtgI CCRYGG 751847 735.75 1359 BtgZI GCGATG 289087 282.90 3534 BtsCI GGATG 3767483 3686.81 271 ClaI ATCGAT 172585 168.89 5921 CviAII CATG 8235776 8059.42 124 CviKI-1 RGCY 24006184 23492.13 42 CviQI GTAC 3566511 3490.14 286 DdeI CTNAG 6828872 6682.64 149 DpnII GATC 4764182 4662.16 214 DraI TTTAAA 2649005 2592.28 385 EaeI YGGCCR 870626 851.98 1173 EagI CGGCCG 107769 105.46 9482 EarI CTCTTC 1200061 1174.36 851 EciI GGCGGA 335316 328.14 3047 Eco53kI GAGCTC 418061 409.11 2444 EcoO109I RGGNCCY 883827 864.90 1156 EcoRI GAATTC 300265 293.84 3403 EcoRV GATATC 257484 251.97 3968 FatI CATG 8235776 8059.42 124 FauI CCCGC 1055820 1033.21 967 Fnu4HI GCNGC 6374189 6237.70 160 FokI GGATG 3767483 3686.81 271 FseI GGCCGGCC 5592 5.47 182739 FspI TGCGCA 167111 163.53 6114 HaeII RGCGCY 766112 749.71 1333 HaeIII GGCC 3777804 3696.91 270 HgaI GACGC 1193665 1168.10 856 HhaI GCGC 2091826 2047.03 488 HincII GTYRAC 1100082 1076.53 928 HindIII AAGCTT 690318 675.54 1480 HinfI GANTC 4954404 4848.31 206 HinP1I GCGC 2091826 2047.03 488 HpaI GTTAAC 351455 343.93 2907 HpaII CCGG 2226850 2179.17 458 HphI GGTGA 3312108 3241.18 308 Hpy188I TCNGA 7326956 7170.06 139 Hpy99I CGWCG 623530 610.18 1638 HpyAV CCTTC 3612426 3535.07 282 HpyCH4III ACNGT 6520012 6380.40 156 HpyCH4IV ACGT 3345107 3273.48 305 HpyCH4V TGCA 11066337 10829.37 92 KasI GGCGCC 134069 131.20 7622 KpnI GGTACC 149383 146.18 6840 MboI GATC 4764182 4662.16 214 MboII GAAGA 4939131 4833.37 206 MfeI CAATTG 354902 347.30 2879 MluCI AATT 12029895 11772.29 84 MluI ACGCGT 84552 82.74 12085 MlyI GAGTC 2377008 2326.11 429 MmeI TCCRAC 1204640 1178.84 848 MnlI CCTC 13586754 13295.81 75 MscI TGGCCA 424399 415.31 2407 MseI TTAA 14641166 14327.65 69 MspA1I CMGCKG 1740981 1703.70 586 MspI CCGG 2226850 2179.17 458 NaeI GCCGGC 154777 151.46 6602 NarI GGCGCC 134069 131.20 7622 NciI CCSGG 1063085 1040.32 961 NcoI CCATGG 342540 335.21 2983 NdeI CATATG 401395 392.80 2545 NgoMIV GCCGGC 154777 151.46 6602 NheI GCTAGC 187634 183.62 5446 NlaIII CATG 8235776 8059.42 124 NmeAIII GCCGAG 334797 327.63 3052 NotI GCGGCCGC 5148 5.04 198500 NruI TCGCGA 40909 40.03 24979 NsiI ATGCAT 750305 734.24 1361 NspI RCATGY 2355979 2305.53 433 PacI TTAATTAA 67694 66.24 15095 PaeR7I CTCGAG 103994 101.77 9826 PciI ACATGT 846452 828.33 1207 PleI GAGTC 2377008 2326.11 429 PluTI GGCGCC 134069 131.20 7622 PmeI GTTTAAAC 33913 33.19 30132 PmlI CACGTG 194584 190.42 5251 PpuMI RGGWCCY 508727 497.83 2008 PsiI TTATAA 855290 836.98 1194 PspGI CCWGG 3444395 3370.64 296 PspOMI GGGCCC 162797 159.31 6277 PspXI VCTCGAGB 30929 30.27 33039 PstI CTGCAG 1268301 1241.14 805 PvuI CGATCG 51355 50.26 19898 PvuII CAGCTG 1073569 1050.58 951 RsaI GTAC 3566511 3490.14 286 RsrII CGGWCCG 57573 56.34 17749 SacI GAGCTC 418061 409.11 2444 SacII CCGCGG 88144 86.26 11593 SalI GTCGAC 97400 95.31 10491 SapI GCTCTTC 248354 243.04 4114 Sau3AI GATC 4764182 4662.16 214 Sau96I GGNCC 3656530 3578.23 279 SbfI CCTGCAGG 34946 34.20 29241 ScaI AGTACT 283405 277.34 3605 ScrFI CCNGG 4507480 4410.96 226 SexAI ACCWGGT 230855 225.91 4426 SfaNI GCATC 2975641 2911.92 343 SfcI CTRYAG 2487829 2434.56 410 SfoI GGCGCC 134069 131.20 7622 SgrAI CRCCGGYG 16434 16.08 62180 SmaI CCCGGG 117756 115.23 8677 SmlI CTYRAG 1191243 1165.73 857 SnaBI TACGTA 114846 112.39 8897 SpeI ACTAGT 228422 223.53 4473 SphI GCATGC 386732 378.45 2642 SrfI GCCCGGGC 2816 2.76 362884 SspI AATATT 1387283 1357.58 736 StuI AGGCCT 364112 356.32 2806 StyD4I CCNGG 4507480 4410.96 226 StyI CCWWGG 1067843 1044.98 956 SwaI ATTTAAAT 94949 92.92 10762 TaqI TCGA 1728856 1691.84 591 TfiI GAWTC 2577396 2522.21 396 TseI GCWGC 5174760 5063.95 197 Tsp45I GTSAC 3013017 2948.50 339 TspMI CCCGGG 117756 115.23 8677 TspRI CASTG 4947627 4841.68 206 XbaI TCTAGA 315474 308.72 3239 XhoI CTCGAG 103994 101.77 9826 XmaI CCCGGG 117756 115.23 8677 ZraI GACGTC 210202 205.70 4861