# Cyprinus carpio genome, 1713.641 Mbp of sequence in 9377 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 285242 166.45 6007 Acc65I GGTACC 176699 103.11 9698 AccI GTMKAC 1456594 850.00 1176 AciI CCGC 5593165 3263.91 306 AclI AACGTT 527499 307.82 3248 AcuI CTGAAG 2774203 1618.89 617 AfeI AGCGCT 408138 238.17 4198 AflII CTTAAG 655881 382.74 2612 AflIII ACRYGT 2399634 1400.31 714 AgeI ACCGGT 182820 106.69 9373 AluI AGCT 12871911 7511.44 133 AlwI GGATC 3124805 1823.49 548 ApaI GGGCCC 220851 128.88 7759 ApaLI GTGCAC 712314 415.67 2405 ApeKI GCWGC 6224394 3632.26 275 ApoI RAATTY 6623009 3864.87 258 AscI GGCGCGCC 1803 1.05 950438 AseI ATTAAT 3055882 1783.27 560 AsiSI GCGATCGC 3382 1.97 506694 AvaI CYCGRG 702327 409.84 2439 AvaII GGWCC 2406456 1404.29 712 AvrII CCTAGG 173979 101.53 9849 BaeGI GKGCMC 1537373 897.14 1114 BamHI GGATCC 330393 192.80 5186 BanI GGYRCC 987754 576.41 1734 BanII GRGCYC 1510940 881.71 1134 BbvI GCAGC 6224394 3632.26 275 BccI CCATC 5352838 3123.66 320 BceAI ACGGC 1647333 961.31 1040 BciVI GTATCC 644130 375.88 2660 BclI TGATCA 1233946 720.07 1388 BcoDI GTCTC 5036402 2939.01 340 BfuAI ACCTGC 1385589 808.56 1236 BfuCI GATC 8010456 4674.52 213 BglII AGATCT 871025 508.29 1967 BlpI GCTNAGC 473913 276.55 3615 BmrI ACTGGG 1001818 584.61 1710 BmtI GCTAGC 265858 155.14 6445 BpmI CTGGAG 2026457 1182.54 845 BpuEI CTTGAG 1512562 882.66 1132 BsaAI YACGTR 1044582 609.57 1640 BsaHI GRCGYC 715913 417.77 2393 BsaI GGTCTC 851337 496.80 2012 BsaWI WCCGGW 712184 415.60 2406 BseRI GAGGAG 1882120 1098.32 910 BsgI GTGCAG 1879346 1096.70 911 BsiEI CGRYCG 367423 214.41 4663 BsiHKAI GWGCWC 2577590 1504.16 664 BsiWI CGTACG 90274 52.68 18982 BsmAI GTCTC 5036402 2939.01 340 BsmBI CGTCTC 686409 400.56 2496 BsmFI GGGAC 2567662 1498.37 667 BsmI GAATGC 1519685 886.82 1127 BsoBI CYCGRG 702327 409.84 2439 Bsp1286I GDGCHC 4071420 2375.89 420 BspCNI CTCAG 6988536 4078.18 245 BspDI ATCGAT 297819 173.79 5753 BspEI TCCGGA 159773 93.24 10725 BspHI TCATGA 1209154 705.61 1417 BspMI ACCTGC 1385589 808.56 1236 BspQI GCTCTTC 413149 241.09 4147 BsrBI CCGCTC 498884 291.13 3434 BsrFI RCCGGY 656650 383.19 2609 BsrGI TGTACA 1488232 868.46 1151 BsrI ACTGG 5708007 3330.92 300 BssHII GCGCGC 144440 84.29 11864 BssSI CACGAG 507370 296.08 3377 BstBI TTCGAA 280562 163.72 6107 BstEII GGTNACC 370003 215.92 4631 BstNI CCWGG 3934370 2295.91 435 BstUI CGCG 1634603 953.88 1048 BstYI RGATCY 2190551 1278.30 782 BstZ17I GTATAC 537775 313.82 3186 Bsu36I CCTNAGG 467811 272.99 3663 BtgI CCRYGG 1046558 610.72 1637 BtgZI GCGATG 482002 281.27 3555 BtsCI GGATG 5279286 3080.74 324 ClaI ATCGAT 297819 173.79 5753 CviAII CATG 15624002 9117.43 109 CviKI-1 RGCY 33766375 19704.46 50 CviQI GTAC 7342429 4284.69 233 DdeI CTNAG 10280906 5999.45 166 DpnII GATC 8010456 4674.52 213 DraI TTTAAA 5527609 3225.65 310 EaeI YGGCCR 1322822 771.94 1295 EagI CGGCCG 111619 65.14 15352 EarI CTCTTC 2015696 1176.26 850 EciI GGCGGA 368645 215.12 4648 Eco53kI GAGCTC 621318 362.57 2758 EcoO109I RGGNCCY 1165476 680.12 1470 EcoRI GAATTC 687268 401.06 2493 EcoRV GATATC 530886 309.80 3227 FatI CATG 15624002 9117.43 109 FauI CCCGC 1188507 693.56 1441 Fnu4HI GCNGC 7601421 4435.83 225 FokI GGATG 5279286 3080.74 324 FseI GGCCGGCC 4834 2.82 354497 FspI TGCGCA 312218 182.20 5488 HaeII RGCGCY 981828 572.95 1745 HaeIII GGCC 5425600 3166.12 315 HgaI GACGC 1561161 911.02 1097 HhaI GCGC 3130409 1826.76 547 HincII GTYRAC 1935000 1129.17 885 HindIII AAGCTT 1034851 603.89 1655 HinfI GANTC 8868492 5175.23 193 HinP1I GCGC 3130409 1826.76 547 HpaI GTTAAC 712985 416.06 2403 HpaII CCGG 2493088 1454.85 687 HphI GGTGA 5132508 2995.09 333 Hpy188I TCNGA 12303177 7179.55 139 Hpy99I CGWCG 716481 418.10 2391 HpyAV CCTTC 4861691 2837.05 352 HpyCH4III ACNGT 13324347 7775.46 128 HpyCH4IV ACGT 4923937 2873.38 348 HpyCH4V TGCA 19878711 11600.27 86 KasI GGCGCC 132014 77.04 12980 KpnI GGTACC 176699 103.11 9698 MboI GATC 8010456 4674.52 213 MboII GAAGA 8283457 4833.83 206 MfeI CAATTG 664629 387.85 2578 MluCI AATT 27188001 15865.63 63 MluI ACGCGT 124805 72.83 13730 MlyI GAGTC 3855516 2249.90 444 MmeI TCCRAC 1441157 840.99 1189 MnlI CCTC 18287205 10671.55 93 MscI TGGCCA 778743 454.44 2200 MseI TTAA 31195040 18203.95 54 MspA1I CMGCKG 2228478 1300.43 768 MspI CCGG 2493088 1454.85 687 NaeI GCCGGC 159673 93.18 10732 NarI GGCGCC 132014 77.04 12980 NciI CCSGG 1167640 681.38 1467 NcoI CCATGG 562489 328.24 3046 NdeI CATATG 1038198 605.84 1650 NgoMIV GCCGGC 159673 93.18 10732 NheI GCTAGC 265858 155.14 6445 NlaIII CATG 15624002 9117.43 109 NmeAIII GCCGAG 378247 220.73 4530 NotI GCGGCCGC 5187 3.03 330372 NruI TCGCGA 97241 56.75 17622 NsiI ATGCAT 2001049 1167.72 856 NspI RCATGY 4568760 2666.11 375 PacI TTAATTAA 201199 117.41 8517 PaeR7I CTCGAG 211516 123.43 8101 PciI ACATGT 1468823 857.14 1166 PleI GAGTC 3855516 2249.90 444 PluTI GGCGCC 132014 77.04 12980 PmeI GTTTAAAC 55736 32.52 30745 PmlI CACGTG 340894 198.93 5026 PpuMI RGGWCCY 632921 369.34 2707 PsiI TTATAA 2434554 1420.69 703 PspGI CCWGG 3934370 2295.91 435 PspOMI GGGCCC 220851 128.88 7759 PspXI VCTCGAGB 57671 33.65 29714 PstI CTGCAG 1494759 872.27 1146 PvuI CGATCG 98019 57.20 17482 PvuII CAGCTG 1447472 844.68 1183 RsaI GTAC 7342429 4284.69 233 RsrII CGGWCCG 41424 24.17 41368 SacI GAGCTC 621318 362.57 2758 SacII CCGCGG 98923 57.73 17322 SalI GTCGAC 143872 83.96 11910 SapI GCTCTTC 413149 241.09 4147 Sau3AI GATC 8010456 4674.52 213 Sau96I GGNCC 4520954 2638.21 379 SbfI CCTGCAGG 31669 18.48 54111 ScaI AGTACT 718724 419.41 2384 ScrFI CCNGG 5102010 2977.29 335 SexAI ACCWGGT 258238 150.70 6635 SfaNI GCATC 5260662 3069.87 325 SfcI CTRYAG 3771484 2200.86 454 SfoI GGCGCC 132014 77.04 12980 SgrAI CRCCGGYG 20890 12.19 82031 SmaI CCCGGG 156871 91.54 10923 SmlI CTYRAG 2379959 1388.83 720 SnaBI TACGTA 237659 138.69 7210 SpeI ACTAGT 629812 367.53 2720 SphI GCATGC 740890 432.35 2312 SrfI GCCCGGGC 3358 1.96 510316 SspI AATATT 3842580 2242.35 445 StuI AGGCCT 607250 354.36 2821 StyD4I CCNGG 5102010 2977.29 335 StyI CCWWGG 1594350 930.39 1074 SwaI ATTTAAAT 262276 153.05 6533 TaqI TCGA 3335015 1946.16 513 TfiI GAWTC 5012976 2925.34 341 TseI GCWGC 6224394 3632.26 275 Tsp45I GTSAC 5513250 3217.27 310 TspMI CCCGGG 156871 91.54 10923 TspRI CASTG 10088372 5887.10 169 XbaI TCTAGA 620997 362.38 2759 XhoI CTCGAG 211516 123.43 8101 XmaI CCCGGG 156871 91.54 10923 ZraI GACGTC 285242 166.45 6007