# Cyprinodon variegatus genome, 1035.168 Mbp of sequence in 9258 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 143279 138.41 7224 Acc65I GGTACC 126881 122.57 8158 AccI GTMKAC 658951 636.56 1570 AciI CCGC 3017825 2915.30 343 AclI AACGTT 261428 252.55 3959 AcuI CTGAAG 1395438 1348.03 741 AfeI AGCGCT 164943 159.34 6275 AflII CTTAAG 399975 386.39 2588 AflIII ACRYGT 1117357 1079.40 926 AgeI ACCGGT 116715 112.75 8869 AluI AGCT 8659144 8364.97 119 AlwI GGATC 2169548 2095.84 477 ApaI GGGCCC 155190 149.92 6670 ApaLI GTGCAC 265013 256.01 3906 ApeKI GCWGC 4464545 4312.87 231 ApoI RAATTY 3409018 3293.20 303 AscI GGCGCGCC 1447 1.40 715389 AseI ATTAAT 1223874 1182.30 845 AsiSI GCGATCGC 681 0.66 1520070 AvaI CYCGRG 281348 271.79 3679 AvaII GGWCC 1738633 1679.57 595 AvrII CCTAGG 101257 97.82 10223 BaeGI GKGCMC 701584 677.75 1475 BamHI GGATCC 257954 249.19 4012 BanI GGYRCC 588984 568.97 1757 BanII GRGCYC 898988 868.45 1151 BbvI GCAGC 4464545 4312.87 231 BccI CCATC 3591948 3469.92 288 BceAI ACGGC 816851 789.10 1267 BciVI GTATCC 335317 323.93 3087 BclI TGATCA 640586 618.82 1615 BcoDI GTCTC 2552751 2466.03 405 BfuAI ACCTGC 982260 948.89 1053 BfuCI GATC 4849698 4684.94 213 BglII AGATCT 527449 509.53 1962 BlpI GCTNAGC 339450 327.92 3049 BmrI ACTGGG 666103 643.47 1554 BmtI GCTAGC 143548 138.67 7211 BpmI CTGGAG 1245569 1203.25 831 BpuEI CTTGAG 669106 646.37 1547 BsaAI YACGTR 364910 352.51 2836 BsaHI GRCGYC 430996 416.35 2401 BsaI GGTCTC 461253 445.58 2244 BsaWI WCCGGW 425288 410.84 2434 BseRI GAGGAG 1394235 1346.87 742 BsgI GTGCAG 1019622 984.98 1015 BsiEI CGRYCG 159893 154.46 6474 BsiHKAI GWGCWC 1164858 1125.28 888 BsiWI CGTACG 32762 31.65 31596 BsmAI GTCTC 2552751 2466.03 405 BsmBI CGTCTC 321254 310.34 3222 BsmFI GGGAC 1610662 1555.94 642 BsmI GAATGC 658685 636.31 1571 BsoBI CYCGRG 281348 271.79 3679 Bsp1286I GDGCHC 1988486 1920.93 520 BspCNI CTCAG 4297078 4151.09 240 BspDI ATCGAT 184685 178.41 5605 BspEI TCCGGA 92146 89.02 11233 BspHI TCATGA 567034 547.77 1825 BspMI ACCTGC 982260 948.89 1053 BspQI GCTCTTC 217710 210.31 4754 BsrBI CCGCTC 294520 284.51 3514 BsrFI RCCGGY 374978 362.24 2760 BsrGI TGTACA 549128 530.47 1885 BsrI ACTGG 3394845 3279.51 304 BssHII GCGCGC 41480 40.07 24955 BssSI CACGAG 169307 163.56 6114 BstBI TTCGAA 108512 104.83 9539 BstEII GGTNACC 204885 197.92 5052 BstNI CCWGG 2984042 2882.66 346 BstUI CGCG 489273 472.65 2115 BstYI RGATCY 1476287 1426.13 701 BstZ17I GTATAC 193016 186.46 5363 Bsu36I CCTNAGG 322456 311.50 3210 BtgI CCRYGG 548685 530.04 1886 BtgZI GCGATG 212480 205.26 4871 BtsCI GGATG 3597407 3475.19 287 ClaI ATCGAT 184685 178.41 5605 CviAII CATG 7759472 7495.86 133 CviKI-1 RGCY 21477656 20747.99 48 CviQI GTAC 3191889 3083.45 324 DdeI CTNAG 6687731 6460.53 154 DpnII GATC 4849698 4684.94 213 DraI TTTAAA 3011387 2909.08 343 EaeI YGGCCR 653858 631.64 1583 EagI CGGCCG 59712 57.68 17336 EarI CTCTTC 1153490 1114.30 897 EciI GGCGGA 238201 230.11 4345 Eco53kI GAGCTC 356741 344.62 2901 EcoO109I RGGNCCY 813266 785.64 1272 EcoRI GAATTC 382454 369.46 2706 EcoRV GATATC 284042 274.39 3644 FatI CATG 7759472 7495.86 133 FauI CCCGC 671503 648.69 1541 Fnu4HI GCNGC 5222272 5044.85 198 FokI GGATG 3597407 3475.19 287 FseI GGCCGGCC 3554 3.43 291268 FspI TGCGCA 124480 120.25 8315 HaeII RGCGCY 505344 488.18 2048 HaeIII GGCC 3041609 2938.28 340 HgaI GACGC 751572 726.04 1377 HhaI GCGC 1330094 1284.91 778 HincII GTYRAC 994798 961.00 1040 HindIII AAGCTT 742127 716.91 1394 HinfI GANTC 4901256 4734.74 211 HinP1I GCGC 1330094 1284.91 778 HpaI GTTAAC 361306 349.03 2865 HpaII CCGG 1409315 1361.44 734 HphI GGTGA 2862269 2765.03 361 Hpy188I TCNGA 7075398 6835.02 146 Hpy99I CGWCG 322000 311.06 3214 HpyAV CCTTC 3323487 3210.58 311 HpyCH4III ACNGT 6054680 5848.98 170 HpyCH4IV ACGT 2164565 2091.03 478 HpyCH4V TGCA 10503627 10146.79 98 KasI GGCGCC 101900 98.44 10158 KpnI GGTACC 126881 122.57 8158 MboI GATC 4849698 4684.94 213 MboII GAAGA 4758950 4597.27 217 MfeI CAATTG 363194 350.86 2850 MluCI AATT 13276452 12825.41 77 MluI ACGCGT 32853 31.74 31509 MlyI GAGTC 2141602 2068.84 483 MmeI TCCRAC 1131047 1092.62 915 MnlI CCTC 12406808 11985.31 83 MscI TGGCCA 349203 337.34 2964 MseI TTAA 16498717 15938.20 62 MspA1I CMGCKG 1413313 1365.30 732 MspI CCGG 1409315 1361.44 734 NaeI GCCGGC 82798 79.99 12502 NarI GGCGCC 101900 98.44 10158 NciI CCSGG 633738 612.21 1633 NcoI CCATGG 317401 306.62 3261 NdeI CATATG 431661 417.00 2398 NgoMIV GCCGGC 82798 79.99 12502 NheI GCTAGC 143548 138.67 7211 NlaIII CATG 7759472 7495.86 133 NmeAIII GCCGAG 204084 197.15 5072 NotI GCGGCCGC 2028 1.96 510437 NruI TCGCGA 27928 26.98 37065 NsiI ATGCAT 812605 785.00 1273 NspI RCATGY 2233672 2157.79 463 PacI TTAATTAA 78459 75.79 13193 PaeR7I CTCGAG 67165 64.88 15412 PciI ACATGT 784445 757.79 1319 PleI GAGTC 2141602 2068.84 483 PluTI GGCGCC 101900 98.44 10158 PmeI GTTTAAAC 36517 35.28 28347 PmlI CACGTG 103607 100.09 9991 PpuMI RGGWCCY 461325 445.65 2243 PsiI TTATAA 1069937 1033.59 967 PspGI CCWGG 2984042 2882.66 346 PspOMI GGGCCC 155190 149.92 6670 PspXI VCTCGAGB 19871 19.20 52094 PstI CTGCAG 1155070 1115.83 896 PvuI CGATCG 29182 28.19 35472 PvuII CAGCTG 994719 960.93 1040 RsaI GTAC 3191889 3083.45 324 RsrII CGGWCCG 33832 32.68 30597 SacI GAGCTC 356741 344.62 2901 SacII CCGCGG 45374 43.83 22814 SalI GTCGAC 69996 67.62 14788 SapI GCTCTTC 217710 210.31 4754 Sau3AI GATC 4849698 4684.94 213 Sau96I GGNCC 3026100 2923.29 342 SbfI CCTGCAGG 32852 31.74 31510 ScaI AGTACT 286842 277.10 3608 ScrFI CCNGG 3617780 3494.87 286 SexAI ACCWGGT 207401 200.35 4991 SfaNI GCATC 2829339 2733.22 365 SfcI CTRYAG 2462003 2378.36 420 SfoI GGCGCC 101900 98.44 10158 SgrAI CRCCGGYG 8504 8.22 121727 SmaI CCCGGG 74586 72.05 13878 SmlI CTYRAG 1136246 1097.64 911 SnaBI TACGTA 93116 89.95 11116 SpeI ACTAGT 246435 238.06 4200 SphI GCATGC 387799 374.62 2669 SrfI GCCCGGGC 2108 2.04 491066 SspI AATATT 1570184 1516.84 659 StuI AGGCCT 324363 313.34 3191 StyD4I CCNGG 3617780 3494.87 286 StyI CCWWGG 1034460 999.32 1000 SwaI ATTTAAAT 108529 104.84 9538 TaqI TCGA 1529786 1477.81 676 TfiI GAWTC 2759654 2665.90 375 TseI GCWGC 4464545 4312.87 231 Tsp45I GTSAC 2429658 2347.11 426 TspMI CCCGGG 74586 72.05 13878 TspRI CASTG 4718730 4558.42 219 XbaI TCTAGA 426185 411.71 2428 XhoI CTCGAG 67165 64.88 15412 XmaI CCCGGG 74586 72.05 13878 ZraI GACGTC 143279 138.41 7224