# Cyprinodon nevadensis genome, 1011.849 Mbp of sequence in 96516 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 120267 118.86 8413 Acc65I GGTACC 116454 115.09 8688 AccI GTMKAC 611412 604.25 1654 AciI CCGC 2494170 2464.96 405 AclI AACGTT 231473 228.76 4371 AcuI CTGAAG 1274337 1259.41 794 AfeI AGCGCT 143603 141.92 7046 AflII CTTAAG 374475 370.09 2702 AflIII ACRYGT 1029721 1017.66 982 AgeI ACCGGT 92714 91.63 10913 AluI AGCT 7933583 7840.68 127 AlwI GGATC 1977757 1954.60 511 ApaI GGGCCC 134569 132.99 7519 ApaLI GTGCAC 242523 239.68 4172 ApeKI GCWGC 3970490 3923.99 254 ApoI RAATTY 3169986 3132.86 319 AscI GGCGCGCC 1021 1.01 991037 AseI ATTAAT 1154405 1140.89 876 AsiSI GCGATCGC 606 0.60 1669717 AvaI CYCGRG 242527 239.69 4172 AvaII GGWCC 1540648 1522.61 656 AvrII CCTAGG 94656 93.55 10689 BaeGI GKGCMC 631806 624.41 1601 BamHI GGATCC 229083 226.40 4416 BanI GGYRCC 513232 507.22 1971 BanII GRGCYC 806185 796.74 1255 BbvI GCAGC 3970490 3923.99 254 BccI CCATC 3247502 3209.47 311 BceAI ACGGC 708766 700.47 1427 BciVI GTATCC 317001 313.29 3191 BclI TGATCA 592613 585.67 1707 BcoDI GTCTC 2305545 2278.55 438 BfuAI ACCTGC 878503 868.22 1151 BfuCI GATC 4440201 4388.21 227 BglII AGATCT 484205 478.53 2089 BlpI GCTNAGC 304457 300.89 3323 BmrI ACTGGG 603024 595.96 1677 BmtI GCTAGC 130929 129.40 7728 BpmI CTGGAG 1085356 1072.65 932 BpuEI CTTGAG 612531 605.36 1651 BsaAI YACGTR 338299 334.34 2990 BsaHI GRCGYC 353824 349.68 2859 BsaI GGTCTC 417789 412.90 2421 BsaWI WCCGGW 366046 361.76 2764 BseRI GAGGAG 1218462 1204.19 830 BsgI GTGCAG 924493 913.67 1094 BsiEI CGRYCG 131414 129.88 7699 BsiHKAI GWGCWC 1063508 1051.05 951 BsiWI CGTACG 26583 26.27 38063 BsmAI GTCTC 2305545 2278.55 438 BsmBI CGTCTC 278364 275.10 3634 BsmFI GGGAC 1442525 1425.63 701 BsmI GAATGC 607615 600.50 1665 BsoBI CYCGRG 242527 239.69 4172 Bsp1286I GDGCHC 1802613 1781.50 561 BspCNI CTCAG 3872982 3827.63 261 BspDI ATCGAT 166006 164.06 6095 BspEI TCCGGA 83708 82.73 12087 BspHI TCATGA 537599 531.30 1882 BspMI ACCTGC 878503 868.22 1151 BspQI GCTCTTC 194558 192.28 5200 BsrBI CCGCTC 240725 237.91 4203 BsrFI RCCGGY 306669 303.08 3299 BsrGI TGTACA 516418 510.37 1959 BsrI ACTGG 3058604 3022.79 330 BssHII GCGCGC 29312 28.97 34519 BssSI CACGAG 150382 148.62 6728 BstBI TTCGAA 102057 100.86 9914 BstEII GGTNACC 184462 182.30 5485 BstNI CCWGG 2632188 2601.36 384 BstUI CGCG 380256 375.80 2660 BstYI RGATCY 1355126 1339.26 746 BstZ17I GTATAC 183794 181.64 5505 Bsu36I CCTNAGG 292738 289.31 3456 BtgI CCRYGG 480535 474.91 2105 BtgZI GCGATG 188175 185.97 5377 BtsCI GGATG 3248654 3210.61 311 ClaI ATCGAT 166006 164.06 6095 CviAII CATG 7142318 7058.68 141 CviKI-1 RGCY 19430944 19203.40 52 CviQI GTAC 2926730 2892.46 345 DdeI CTNAG 6087478 6016.19 166 DpnII GATC 4440201 4388.21 227 DraI TTTAAA 2781762 2749.19 363 EaeI YGGCCR 570915 564.23 1772 EagI CGGCCG 45352 44.82 22311 EarI CTCTTC 1049753 1037.46 963 EciI GGCGGA 198195 195.87 5105 Eco53kI GAGCTC 321794 318.03 3144 EcoO109I RGGNCCY 729260 720.72 1387 EcoRI GAATTC 347582 343.51 2911 EcoRV GATATC 258627 255.60 3912 FatI CATG 7142318 7058.68 141 FauI CCCGC 534532 528.27 1892 Fnu4HI GCNGC 4576688 4523.09 221 FokI GGATG 3248654 3210.61 311 FseI GGCCGGCC 2728 2.70 370912 FspI TGCGCA 104632 103.41 9670 HaeII RGCGCY 427659 422.65 2366 HaeIII GGCC 2691171 2659.66 375 HgaI GACGC 634332 626.90 1595 HhaI GCGC 1108794 1095.81 912 HincII GTYRAC 923203 912.39 1096 HindIII AAGCTT 690629 682.54 1465 HinfI GANTC 4441756 4389.74 227 HinP1I GCGC 1108794 1095.81 912 HpaI GTTAAC 336552 332.61 3006 HpaII CCGG 1190818 1176.87 849 HphI GGTGA 2593454 2563.08 390 Hpy188I TCNGA 6446200 6370.71 156 Hpy99I CGWCG 261963 258.90 3862 HpyAV CCTTC 3019352 2983.99 335 HpyCH4III ACNGT 5531974 5467.19 182 HpyCH4IV ACGT 1937389 1914.70 522 HpyCH4V TGCA 9625448 9512.73 105 KasI GGCGCC 79913 78.98 12661 KpnI GGTACC 116454 115.09 8688 MboI GATC 4440201 4388.21 227 MboII GAAGA 4350175 4299.23 232 MfeI CAATTG 334046 330.13 3029 MluCI AATT 12392294 12247.18 81 MluI ACGCGT 28797 28.46 35137 MlyI GAGTC 1923876 1901.35 525 MmeI TCCRAC 1031299 1019.22 981 MnlI CCTC 11094865 10964.94 91 MscI TGGCCA 319472 315.73 3167 MseI TTAA 15315945 15136.59 66 MspA1I CMGCKG 1240225 1225.70 815 MspI CCGG 1190818 1176.87 849 NaeI GCCGGC 63725 62.98 15878 NarI GGCGCC 79913 78.98 12661 NciI CCSGG 527969 521.79 1916 NcoI CCATGG 287365 284.00 3521 NdeI CATATG 405173 400.43 2497 NgoMIV GCCGGC 63725 62.98 15878 NheI GCTAGC 130929 129.40 7728 NlaIII CATG 7142318 7058.68 141 NmeAIII GCCGAG 169420 167.44 5972 NotI GCGGCCGC 1445 1.43 700241 NruI TCGCGA 23014 22.74 43966 NsiI ATGCAT 754407 745.57 1341 NspI RCATGY 2056120 2032.04 492 PacI TTAATTAA 73366 72.51 13791 PaeR7I CTCGAG 60771 60.06 16650 PciI ACATGT 726466 717.96 1392 PleI GAGTC 1923876 1901.35 525 PluTI GGCGCC 79913 78.98 12661 PmeI GTTTAAAC 34090 33.69 29681 PmlI CACGTG 94384 93.28 10720 PpuMI RGGWCCY 416959 412.08 2426 PsiI TTATAA 1020924 1008.97 991 PspGI CCWGG 2632188 2601.36 384 PspOMI GGGCCC 134569 132.99 7519 PspXI VCTCGAGB 17810 17.60 56813 PstI CTGCAG 1033979 1021.87 978 PvuI CGATCG 26636 26.32 37988 PvuII CAGCTG 890712 880.28 1136 RsaI GTAC 2926730 2892.46 345 RsrII CGGWCCG 26255 25.95 38539 SacI GAGCTC 321794 318.03 3144 SacII CCGCGG 32139 31.76 31483 SalI GTCGAC 63958 63.21 15820 SapI GCTCTTC 194558 192.28 5200 Sau3AI GATC 4440201 4388.21 227 Sau96I GGNCC 2666314 2635.09 379 SbfI CCTGCAGG 28501 28.17 35502 ScaI AGTACT 260307 257.26 3887 ScrFI CCNGG 3160157 3123.15 320 SexAI ACCWGGT 188576 186.37 5365 SfaNI GCATC 2583785 2553.53 391 SfcI CTRYAG 2237163 2210.97 452 SfoI GGCGCC 79913 78.98 12661 SgrAI CRCCGGYG 6585 6.51 153659 SmaI CCCGGG 60242 59.54 16796 SmlI CTYRAG 1047777 1035.51 965 SnaBI TACGTA 87307 86.28 11589 SpeI ACTAGT 228204 225.53 4433 SphI GCATGC 344326 340.29 2938 SrfI GCCCGGGC 1492 1.47 678182 SspI AATATT 1467696 1450.51 689 StuI AGGCCT 294920 291.47 3430 StyD4I CCNGG 3160157 3123.15 320 StyI CCWWGG 934005 923.07 1083 SwaI ATTTAAAT 102117 100.92 9908 TaqI TCGA 1376347 1360.23 735 TfiI GAWTC 2517880 2488.40 401 TseI GCWGC 3970490 3923.99 254 Tsp45I GTSAC 2215553 2189.61 456 TspMI CCCGGG 60242 59.54 16796 TspRI CASTG 4298589 4248.25 235 XbaI TCTAGA 390221 385.65 2593 XhoI CTCGAG 60771 60.06 16650 XmaI CCCGGG 60242 59.54 16796 ZraI GACGTC 120267 118.86 8413