# Cottus rhenanus genome, 563.609 Mbp of sequence in 164693 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 127787 226.73 4410 Acc65I GGTACC 66030 117.16 8535 AccI GTMKAC 450186 798.76 1251 AciI CCGC 2817441 4998.92 200 AclI AACGTT 195096 346.15 2888 AcuI CTGAAG 782463 1388.31 720 AfeI AGCGCT 153835 272.95 3663 AflII CTTAAG 150249 266.58 3751 AflIII ACRYGT 950883 1687.13 592 AgeI ACCGGT 82449 146.29 6835 AluI AGCT 4391352 7791.48 128 AlwI GGATC 1123478 1993.36 501 ApaI GGGCCC 102357 181.61 5506 ApaLI GTGCAC 250791 444.97 2247 ApeKI GCWGC 2725417 4835.65 206 ApoI RAATTY 909234 1613.23 619 AscI GGCGCGCC 879 1.56 641193 AseI ATTAAT 549807 975.51 1025 AsiSI GCGATCGC 1271 2.26 443437 AvaI CYCGRG 380385 674.91 1481 AvaII GGWCC 1064265 1888.30 529 AvrII CCTAGG 27858 49.43 20231 BaeGI GKGCMC 573465 1017.49 982 BamHI GGATCC 132891 235.79 4241 BanI GGYRCC 378436 671.45 1489 BanII GRGCYC 656327 1164.51 858 BbvI GCAGC 2725417 4835.65 206 BccI CCATC 1930253 3424.81 291 BceAI ACGGC 864672 1534.17 651 BciVI GTATCC 216562 384.24 2602 BclI TGATCA 305686 542.37 1843 BcoDI GTCTC 1907738 3384.86 295 BfuAI ACCTGC 563900 1000.52 999 BfuCI GATC 2369188 4203.60 237 BglII AGATCT 204058 362.06 2762 BlpI GCTNAGC 232419 412.38 2424 BmrI ACTGGG 379492 673.32 1485 BmtI GCTAGC 122232 216.87 4610 BpmI CTGGAG 755561 1340.58 745 BpuEI CTTGAG 436195 773.93 1292 BsaAI YACGTR 418273 742.13 1347 BsaHI GRCGYC 393750 698.62 1431 BsaI GGTCTC 337992 599.69 1667 BsaWI WCCGGW 333418 591.58 1690 BseRI GAGGAG 1178157 2090.38 478 BsgI GTGCAG 703779 1248.70 800 BsiEI CGRYCG 209065 370.94 2695 BsiHKAI GWGCWC 924896 1641.02 609 BsiWI CGTACG 35189 62.44 16016 BsmAI GTCTC 1907738 3384.86 295 BsmBI CGTCTC 370243 656.91 1522 BsmFI GGGAC 1129505 2004.06 498 BsmI GAATGC 407024 722.17 1384 BsoBI CYCGRG 380385 674.91 1481 Bsp1286I GDGCHC 1553110 2755.65 362 BspCNI CTCAG 2369659 4204.43 237 BspDI ATCGAT 87003 154.37 6478 BspEI TCCGGA 70664 125.38 7975 BspHI TCATGA 322769 572.68 1746 BspMI ACCTGC 563900 1000.52 999 BspQI GCTCTTC 139201 246.98 4048 BsrBI CCGCTC 275069 488.05 2048 BsrFI RCCGGY 412683 732.21 1365 BsrGI TGTACA 380552 675.21 1481 BsrI ACTGG 1781269 3160.47 316 BssHII GCGCGC 49923 88.58 11289 BssSI CACGAG 263186 466.97 2141 BstBI TTCGAA 48309 85.71 11666 BstEII GGTNACC 121732 215.99 4629 BstNI CCWGG 1622792 2879.28 347 BstUI CGCG 654104 1160.56 861 BstYI RGATCY 650680 1154.49 866 BstZ17I GTATAC 127131 225.57 4433 Bsu36I CCTNAGG 162541 288.39 3467 BtgI CCRYGG 445177 789.87 1266 BtgZI GCGATG 216418 383.99 2604 BtsCI GGATG 1968262 3492.24 286 ClaI ATCGAT 87003 154.37 6478 CviAII CATG 4794466 8506.72 117 CviKI-1 RGCY 12607715 22369.60 44 CviQI GTAC 2099782 3725.60 268 DdeI CTNAG 3177175 5637.19 177 DpnII GATC 2369188 4203.60 237 DraI TTTAAA 991889 1759.89 568 EaeI YGGCCR 549498 974.96 1025 EagI CGGCCG 80698 143.18 6984 EarI CTCTTC 767959 1362.57 733 EciI GGCGGA 212040 376.22 2658 Eco53kI GAGCTC 248430 440.78 2268 EcoO109I RGGNCCY 497969 883.54 1131 EcoRI GAATTC 148525 263.52 3794 EcoRV GATATC 154625 274.35 3645 FatI CATG 4794466 8506.72 117 FauI CCCGC 640344 1136.15 880 Fnu4HI GCNGC 3491878 6195.56 161 FokI GGATG 1968262 3492.24 286 FseI GGCCGGCC 4546 8.07 123979 FspI TGCGCA 74777 132.68 7537 HaeII RGCGCY 441186 782.79 1277 HaeIII GGCC 2322363 4120.52 242 HgaI GACGC 763011 1353.79 738 HhaI GCGC 1156620 2052.17 487 HincII GTYRAC 686995 1218.92 820 HindIII AAGCTT 264767 469.77 2128 HinfI GANTC 2681574 4757.86 210 HinP1I GCGC 1156620 2052.17 487 HpaI GTTAAC 187981 333.53 2998 HpaII CCGG 1492670 2648.41 377 HphI GGTGA 1869871 3317.67 301 Hpy188I TCNGA 3503970 6217.02 160 Hpy99I CGWCG 447570 794.11 1259 HpyAV CCTTC 1930331 3424.94 291 HpyCH4III ACNGT 3599119 6385.84 156 HpyCH4IV ACGT 2045055 3628.50 275 HpyCH4V TGCA 5911879 10489.32 95 KasI GGCGCC 73912 131.14 7625 KpnI GGTACC 66030 117.16 8535 MboI GATC 2369188 4203.60 237 MboII GAAGA 2706685 4802.41 208 MfeI CAATTG 193740 343.75 2909 MluCI AATT 5051923 8963.52 111 MluI ACGCGT 50571 89.73 11144 MlyI GAGTC 1409366 2500.61 399 MmeI TCCRAC 648810 1151.17 868 MnlI CCTC 8839061 15682.95 63 MscI TGGCCA 232067 411.75 2428 MseI TTAA 6353578 11273.02 88 MspA1I CMGCKG 992333 1760.67 567 MspI CCGG 1492670 2648.41 377 NaeI GCCGGC 124289 220.52 4534 NarI GGCGCC 73912 131.14 7625 NciI CCSGG 733295 1301.07 768 NcoI CCATGG 169859 301.38 3318 NdeI CATATG 245716 435.97 2293 NgoMIV GCCGGC 124289 220.52 4534 NheI GCTAGC 122232 216.87 4610 NlaIII CATG 4794466 8506.72 117 NmeAIII GCCGAG 269444 478.07 2091 NotI GCGGCCGC 3355 5.95 167990 NruI TCGCGA 22683 40.25 24847 NsiI ATGCAT 447524 794.03 1259 NspI RCATGY 1485184 2635.13 379 PacI TTAATTAA 35455 62.91 15896 PaeR7I CTCGAG 94335 167.38 5974 PciI ACATGT 526387 933.96 1070 PleI GAGTC 1409366 2500.61 399 PluTI GGCGCC 73912 131.14 7625 PmeI GTTTAAAC 12617 22.39 44670 PmlI CACGTG 159831 283.58 3526 PpuMI RGGWCCY 264079 468.55 2134 PsiI TTATAA 403945 716.71 1395 PspGI CCWGG 1622792 2879.28 347 PspOMI GGGCCC 102357 181.61 5506 PspXI VCTCGAGB 29530 52.39 19085 PstI CTGCAG 671922 1192.18 838 PvuI CGATCG 33318 59.12 16916 PvuII CAGCTG 578804 1026.96 973 RsaI GTAC 2099782 3725.60 268 RsrII CGGWCCG 29722 52.74 18962 SacI GAGCTC 248430 440.78 2268 SacII CCGCGG 57070 101.26 9875 SalI GTCGAC 77092 136.78 7310 SapI GCTCTTC 139201 246.98 4048 Sau3AI GATC 2369188 4203.60 237 Sau96I GGNCC 2048316 3634.28 275 SbfI CCTGCAGG 21389 37.95 26350 ScaI AGTACT 166449 295.33 3386 ScrFI CCNGG 2356087 4180.35 239 SexAI ACCWGGT 105942 187.97 5319 SfaNI GCATC 1659556 2944.51 339 SfcI CTRYAG 1251885 2221.19 450 SfoI GGCGCC 73912 131.14 7625 SgrAI CRCCGGYG 12682 22.50 44441 SmaI CCCGGG 88163 156.43 6392 SmlI CTYRAG 680779 1207.89 827 SnaBI TACGTA 69973 124.15 8054 SpeI ACTAGT 115400 204.75 4883 SphI GCATGC 252184 447.44 2234 SrfI GCCCGGGC 2615 4.64 215529 SspI AATATT 666932 1183.32 845 StuI AGGCCT 204335 362.55 2758 StyD4I CCNGG 2356087 4180.35 239 StyI CCWWGG 470943 835.58 1196 SwaI ATTTAAAT 41394 73.44 13615 TaqI TCGA 1167260 2071.04 482 TfiI GAWTC 1272208 2257.25 443 TseI GCWGC 2725417 4835.65 206 Tsp45I GTSAC 1867499 3313.46 301 TspMI CCCGGG 88163 156.43 6392 TspRI CASTG 2875871 5102.60 195 XbaI TCTAGA 123174 218.54 4575 XhoI CTCGAG 94335 167.38 5974 XmaI CCCGGG 88163 156.43 6392 ZraI GACGTC 127787 226.73 4410