# Clupea harengus genome, 807.695 Mbp of sequence in 6914 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 126662 156.82 6376 Acc65I GGTACC 107653 133.28 7502 AccI GTMKAC 700071 866.75 1153 AciI CCGC 3599075 4455.98 224 AclI AACGTT 217638 269.46 3711 AcuI CTGAAG 1094732 1355.38 737 AfeI AGCGCT 202553 250.78 3987 AflII CTTAAG 248051 307.11 3256 AflIII ACRYGT 1295330 1603.74 623 AgeI ACCGGT 93107 115.27 8674 AluI AGCT 5617406 6954.86 143 AlwI GGATC 1336448 1654.64 604 ApaI GGGCCC 192858 238.78 4188 ApaLI GTGCAC 389254 481.93 2074 ApeKI GCWGC 3082199 3816.04 262 ApoI RAATTY 1316271 1629.66 613 AscI GGCGCGCC 1984 2.46 407104 AseI ATTAAT 590825 731.49 1367 AsiSI GCGATCGC 1802 2.23 448221 AvaI CYCGRG 395758 489.98 2040 AvaII GGWCC 1359102 1682.69 594 AvrII CCTAGG 106716 132.12 7568 BaeGI GKGCMC 1049644 1299.55 769 BamHI GGATCC 151814 187.96 5320 BanI GGYRCC 628610 778.28 1284 BanII GRGCYC 963442 1192.83 838 BbvI GCAGC 3082199 3816.04 262 BccI CCATC 2981527 3691.40 270 BceAI ACGGC 1045206 1294.06 772 BciVI GTATCC 315456 390.56 2560 BclI TGATCA 423159 523.91 1908 BcoDI GTCTC 2989414 3701.17 270 BfuAI ACCTGC 723184 895.37 1116 BfuCI GATC 3102864 3841.63 260 BglII AGATCT 306566 379.56 2634 BlpI GCTNAGC 280393 347.15 2880 BmrI ACTGGG 648735 803.19 1245 BmtI GCTAGC 248735 307.96 3247 BpmI CTGGAG 1040530 1288.27 776 BpuEI CTTGAG 633152 783.90 1275 BsaAI YACGTR 630338 780.42 1281 BsaHI GRCGYC 439525 544.17 1837 BsaI GGTCTC 486153 601.90 1661 BsaWI WCCGGW 351759 435.51 2296 BseRI GAGGAG 1911635 2366.78 422 BsgI GTGCAG 1006755 1246.45 802 BsiEI CGRYCG 204529 253.23 3949 BsiHKAI GWGCWC 1384167 1713.72 583 BsiWI CGTACG 45213 55.98 17864 BsmAI GTCTC 2989414 3701.17 270 BsmBI CGTCTC 427469 529.25 1889 BsmFI GGGAC 1591531 1970.46 507 BsmI GAATGC 639339 791.56 1263 BsoBI CYCGRG 395758 489.98 2040 Bsp1286I GDGCHC 2506049 3102.72 322 BspCNI CTCAG 3571376 4421.69 226 BspDI ATCGAT 111917 138.56 7216 BspEI TCCGGA 82207 101.78 9825 BspHI TCATGA 458599 567.79 1761 BspMI ACCTGC 723184 895.37 1116 BspQI GCTCTTC 197086 244.01 4098 BsrBI CCGCTC 321716 398.31 2510 BsrFI RCCGGY 391825 485.11 2061 BsrGI TGTACA 596801 738.89 1353 BsrI ACTGG 2844668 3521.96 283 BssHII GCGCGC 116663 144.44 6923 BssSI CACGAG 284791 352.60 2836 BstBI TTCGAA 95022 117.65 8500 BstEII GGTNACC 198963 246.33 4059 BstNI CCWGG 2606311 3226.85 309 BstUI CGCG 1008566 1248.70 800 BstYI RGATCY 883438 1093.78 914 BstZ17I GTATAC 222223 275.13 3634 Bsu36I CCTNAGG 287264 355.66 2811 BtgI CCRYGG 736196 911.48 1097 BtgZI GCGATG 264460 327.43 3054 BtsCI GGATG 2730973 3381.19 295 ClaI ATCGAT 111917 138.56 7216 CviAII CATG 7289989 9025.67 110 CviKI-1 RGCY 18279862 22632.13 44 CviQI GTAC 3216515 3982.34 251 DdeI CTNAG 5030647 6228.40 160 DpnII GATC 3102864 3841.63 260 DraI TTTAAA 1027810 1272.52 785 EaeI YGGCCR 786029 973.18 1027 EagI CGGCCG 72675 89.98 11113 EarI CTCTTC 1316449 1629.88 613 EciI GGCGGA 254489 315.08 3173 Eco53kI GAGCTC 309092 382.68 2613 EcoO109I RGGNCCY 852013 1054.87 947 EcoRI GAATTC 239270 296.24 3375 EcoRV GATATC 207524 256.93 3892 FatI CATG 7289989 9025.67 110 FauI CCCGC 894197 1107.10 903 Fnu4HI GCNGC 3939447 4877.39 205 FokI GGATG 2730973 3381.19 295 FseI GGCCGGCC 4723 5.85 171013 FspI TGCGCA 163460 202.38 4941 HaeII RGCGCY 591196 731.95 1366 HaeIII GGCC 3706860 4589.43 217 HgaI GACGC 890695 1102.76 906 HhaI GCGC 1939027 2400.69 416 HincII GTYRAC 861873 1067.08 937 HindIII AAGCTT 332639 411.84 2428 HinfI GANTC 3575582 4426.89 225 HinP1I GCGC 1939027 2400.69 416 HpaI GTTAAC 259476 321.25 3112 HpaII CCGG 1467056 1816.35 550 HphI GGTGA 2849889 3528.42 283 Hpy188I TCNGA 4846207 6000.04 166 Hpy99I CGWCG 432685 535.70 1866 HpyAV CCTTC 2882287 3568.53 280 HpyCH4III ACNGT 5399487 6685.05 149 HpyCH4IV ACGT 2453382 3037.51 329 HpyCH4V TGCA 7869922 9743.68 102 KasI GGCGCC 94147 116.56 8579 KpnI GGTACC 107653 133.28 7502 MboI GATC 3102864 3841.63 260 MboII GAAGA 3763780 4659.90 214 MfeI CAATTG 259242 320.97 3115 MluCI AATT 6353516 7866.23 127 MluI ACGCGT 67043 83.01 12047 MlyI GAGTC 1833464 2269.99 440 MmeI TCCRAC 754938 934.68 1069 MnlI CCTC 13600791 16839.01 59 MscI TGGCCA 421936 522.40 1914 MseI TTAA 7458302 9234.05 108 MspA1I CMGCKG 1139101 1410.31 709 MspI CCGG 1467056 1816.35 550 NaeI GCCGGC 112302 139.04 7192 NarI GGCGCC 94147 116.56 8579 NciI CCSGG 741038 917.47 1089 NcoI CCATGG 355896 440.63 2269 NdeI CATATG 437729 541.95 1845 NgoMIV GCCGGC 112302 139.04 7192 NheI GCTAGC 248735 307.96 3247 NlaIII CATG 7289989 9025.67 110 NmeAIII GCCGAG 255405 316.21 3162 NotI GCGGCCGC 3783 4.68 213506 NruI TCGCGA 38664 47.87 20890 NsiI ATGCAT 631321 781.63 1279 NspI RCATGY 2227137 2757.40 362 PacI TTAATTAA 34470 42.68 23431 PaeR7I CTCGAG 92350 114.34 8746 PciI ACATGT 696402 862.21 1159 PleI GAGTC 1833464 2269.99 440 PluTI GGCGCC 94147 116.56 8579 PmeI GTTTAAAC 14439 17.88 55938 PmlI CACGTG 218683 270.75 3693 PpuMI RGGWCCY 385040 476.71 2097 PsiI TTATAA 470039 581.95 1718 PspGI CCWGG 2606311 3226.85 309 PspOMI GGGCCC 192858 238.78 4188 PspXI VCTCGAGB 25861 32.02 31232 PstI CTGCAG 704901 872.73 1145 PvuI CGATCG 37559 46.50 21504 PvuII CAGCTG 665707 824.21 1213 RsaI GTAC 3216515 3982.34 251 RsrII CGGWCCG 23609 29.23 34211 SacI GAGCTC 309092 382.68 2613 SacII CCGCGG 69788 86.40 11573 SalI GTCGAC 72577 89.86 11128 SapI GCTCTTC 197086 244.01 4098 Sau3AI GATC 3102864 3841.63 260 Sau96I GGNCC 3060180 3788.78 263 SbfI CCTGCAGG 21540 26.67 37497 ScaI AGTACT 255112 315.85 3166 ScrFI CCNGG 3347349 4144.32 241 SexAI ACCWGGT 140163 173.53 5762 SfaNI GCATC 2164475 2679.82 373 SfcI CTRYAG 1736995 2150.56 464 SfoI GGCGCC 94147 116.56 8579 SgrAI CRCCGGYG 13904 17.21 58090 SmaI CCCGGG 100885 124.90 8006 SmlI CTYRAG 973553 1205.35 829 SnaBI TACGTA 110811 137.19 7288 SpeI ACTAGT 208509 258.15 3873 SphI GCATGC 383309 474.57 2107 SrfI GCCCGGGC 3785 4.69 213393 SspI AATATT 702039 869.19 1150 StuI AGGCCT 393729 487.47 2051 StyD4I CCNGG 3347349 4144.32 241 StyI CCWWGG 977530 1210.27 826 SwaI ATTTAAAT 40400 50.02 19992 TaqI TCGA 1406620 1741.52 574 TfiI GAWTC 1742118 2156.90 463 TseI GCWGC 3082199 3816.04 262 Tsp45I GTSAC 2642003 3271.04 305 TspMI CCCGGG 100885 124.90 8006 TspRI CASTG 4948471 6126.66 163 XbaI TCTAGA 222900 275.97 3623 XhoI CTCGAG 92350 114.34 8746 XmaI CCCGGG 100885 124.90 8006 ZraI GACGTC 126662 156.82 6376