# Austrofundulus limnaeus genome, 866.963 Mbp of sequence in 29785 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 142676 164.57 6076 Acc65I GGTACC 114055 131.56 7601 AccI GTMKAC 522811 603.04 1658 AciI CCGC 2437485 2811.52 355 AclI AACGTT 263175 303.56 3294 AcuI CTGAAG 1345175 1551.59 644 AfeI AGCGCT 136670 157.64 6343 AflII CTTAAG 239093 275.78 3626 AflIII ACRYGT 1209236 1394.79 716 AgeI ACCGGT 96498 111.31 8984 AluI AGCT 7152051 8249.54 121 AlwI GGATC 1457159 1680.76 594 ApaI GGGCCC 100575 116.01 8620 ApaLI GTGCAC 271321 312.96 3195 ApeKI GCWGC 3617040 4172.08 239 ApoI RAATTY 2596566 2995.01 333 AscI GGCGCGCC 871 1.00 995365 AseI ATTAAT 834526 962.59 1038 AsiSI GCGATCGC 1298 1.50 667922 AvaI CYCGRG 329070 379.57 2634 AvaII GGWCC 1610894 1858.09 538 AvrII CCTAGG 61356 70.77 14130 BaeGI GKGCMC 643269 741.98 1347 BamHI GGATCC 159691 184.20 5429 BanI GGYRCC 471399 543.74 1839 BanII GRGCYC 734160 846.82 1180 BbvI GCAGC 3617040 4172.08 239 BccI CCATC 2779694 3206.24 311 BceAI ACGGC 693941 800.43 1249 BciVI GTATCC 205710 237.28 4214 BclI TGATCA 462765 533.78 1873 BcoDI GTCTC 2370912 2734.73 365 BfuAI ACCTGC 776385 895.52 1116 BfuCI GATC 3250301 3749.06 266 BglII AGATCT 339751 391.89 2551 BlpI GCTNAGC 302199 348.57 2868 BmrI ACTGGG 508788 586.86 1703 BmtI GCTAGC 152911 176.38 5669 BpmI CTGGAG 951955 1098.03 910 BpuEI CTTGAG 521987 602.09 1660 BsaAI YACGTR 445868 514.29 1944 BsaHI GRCGYC 356504 411.21 2431 BsaI GGTCTC 435485 502.31 1990 BsaWI WCCGGW 374572 432.05 2314 BseRI GAGGAG 1322263 1525.17 655 BsgI GTGCAG 878061 1012.80 987 BsiEI CGRYCG 166994 192.62 5191 BsiHKAI GWGCWC 1073499 1238.23 807 BsiWI CGTACG 68142 78.60 12722 BsmAI GTCTC 2370912 2734.73 365 BsmBI CGTCTC 358282 413.26 2419 BsmFI GGGAC 1388609 1601.69 624 BsmI GAATGC 464774 536.09 1865 BsoBI CYCGRG 329070 379.57 2634 Bsp1286I GDGCHC 1757788 2027.52 493 BspCNI CTCAG 3915944 4516.85 221 BspDI ATCGAT 136464 157.40 6353 BspEI TCCGGA 72849 84.03 11900 BspHI TCATGA 486700 561.38 1781 BspMI ACCTGC 776385 895.52 1116 BspQI GCTCTTC 165502 190.90 5238 BsrBI CCGCTC 230133 265.45 3767 BsrFI RCCGGY 317735 366.49 2728 BsrGI TGTACA 517026 596.36 1676 BsrI ACTGG 2610639 3011.25 332 BssHII GCGCGC 50098 57.79 17305 BssSI CACGAG 254907 294.02 3401 BstBI TTCGAA 81843 94.40 10593 BstEII GGTNACC 151950 175.27 5705 BstNI CCWGG 2375026 2739.48 365 BstUI CGCG 534843 616.92 1620 BstYI RGATCY 938485 1082.50 923 BstZ17I GTATAC 127388 146.94 6805 Bsu36I CCTNAGG 225747 260.39 3840 BtgI CCRYGG 445103 513.40 1947 BtgZI GCGATG 180233 207.89 4810 BtsCI GGATG 2679809 3091.03 323 ClaI ATCGAT 136464 157.40 6353 CviAII CATG 6066806 6997.77 142 CviKI-1 RGCY 16830394 19413.04 51 CviQI GTAC 2804271 3234.59 309 DdeI CTNAG 5244783 6049.60 165 DpnII GATC 3250301 3749.06 266 DraI TTTAAA 2369420 2733.01 365 EaeI YGGCCR 515645 594.77 1681 EagI CGGCCG 56490 65.16 15347 EarI CTCTTC 867540 1000.67 999 EciI GGCGGA 198287 228.71 4372 Eco53kI GAGCTC 321244 370.54 2698 EcoO109I RGGNCCY 665135 767.20 1303 EcoRI GAATTC 213070 245.77 4068 EcoRV GATATC 158427 182.74 5472 FatI CATG 6066806 6997.77 142 FauI CCCGC 635029 732.48 1365 Fnu4HI GCNGC 4191867 4835.11 206 FokI GGATG 2679809 3091.03 323 FseI GGCCGGCC 2728 3.15 317801 FspI TGCGCA 122583 141.39 7072 HaeII RGCGCY 370916 427.83 2337 HaeIII GGCC 2431843 2805.01 356 HgaI GACGC 647844 747.26 1338 HhaI GCGC 1111645 1282.23 779 HincII GTYRAC 908958 1048.44 953 HindIII AAGCTT 453173 522.71 1913 HinfI GANTC 3738794 4312.52 231 HinP1I GCGC 1111645 1282.23 779 HpaI GTTAAC 275869 318.20 3142 HpaII CCGG 1249616 1441.37 693 HphI GGTGA 2428916 2801.64 356 Hpy188I TCNGA 5738729 6619.34 151 Hpy99I CGWCG 380207 438.55 2280 HpyAV CCTTC 2326077 2683.02 372 HpyCH4III ACNGT 5168607 5961.74 167 HpyCH4IV ACGT 2411636 2781.70 359 HpyCH4V TGCA 7400802 8536.47 117 KasI GGCGCC 61053 70.42 14200 KpnI GGTACC 114055 131.56 7601 MboI GATC 3250301 3749.06 266 MboII GAAGA 3593636 4145.08 241 MfeI CAATTG 199338 229.93 4349 MluCI AATT 9329761 10761.43 92 MluI ACGCGT 39602 45.68 21891 MlyI GAGTC 1958935 2259.54 442 MmeI TCCRAC 898733 1036.64 964 MnlI CCTC 10056849 11600.09 86 MscI TGGCCA 272267 314.05 3184 MseI TTAA 11561232 13335.32 74 MspA1I CMGCKG 1281886 1478.59 676 MspI CCGG 1249616 1441.37 693 NaeI GCCGGC 74475 85.90 11640 NarI GGCGCC 61053 70.42 14200 NciI CCSGG 591239 681.97 1466 NcoI CCATGG 212935 245.61 4071 NdeI CATATG 250667 289.13 3458 NgoMIV GCCGGC 74475 85.90 11640 NheI GCTAGC 152911 176.38 5669 NlaIII CATG 6066806 6997.77 142 NmeAIII GCCGAG 207403 239.23 4180 NotI GCGGCCGC 2243 2.59 386519 NruI TCGCGA 24876 28.69 34851 NsiI ATGCAT 497436 573.77 1742 NspI RCATGY 1729732 1995.16 501 PacI TTAATTAA 53477 61.68 16211 PaeR7I CTCGAG 91332 105.35 9492 PciI ACATGT 726023 837.43 1194 PleI GAGTC 1958935 2259.54 442 PluTI GGCGCC 61053 70.42 14200 PmeI GTTTAAAC 30729 35.44 28213 PmlI CACGTG 171745 198.10 5047 PpuMI RGGWCCY 436128 503.05 1987 PsiI TTATAA 781190 901.06 1109 PspGI CCWGG 2375026 2739.48 365 PspOMI GGGCCC 100575 116.01 8620 PspXI VCTCGAGB 30062 34.68 28839 PstI CTGCAG 1002134 1155.91 865 PvuI CGATCG 27544 31.77 31475 PvuII CAGCTG 938496 1082.51 923 RsaI GTAC 2804271 3234.59 309 RsrII CGGWCCG 35864 41.37 24173 SacI GAGCTC 321244 370.54 2698 SacII CCGCGG 43122 49.74 20104 SalI GTCGAC 81899 94.47 10585 SapI GCTCTTC 165502 190.90 5238 Sau3AI GATC 3250301 3749.06 266 Sau96I GGNCC 2720853 3138.37 318 SbfI CCTGCAGG 32708 37.73 26506 ScaI AGTACT 238888 275.55 3629 ScrFI CCNGG 2966265 3421.44 292 SexAI ACCWGGT 194942 224.86 4447 SfaNI GCATC 1908571 2201.44 454 SfcI CTRYAG 1939745 2237.40 446 SfoI GGCGCC 61053 70.42 14200 SgrAI CRCCGGYG 10012 11.55 86592 SmaI CCCGGG 68871 79.44 12588 SmlI CTYRAG 852412 983.22 1017 SnaBI TACGTA 87741 101.20 9880 SpeI ACTAGT 172856 199.38 5015 SphI GCATGC 208778 240.82 4152 SrfI GCCCGGGC 2173 2.51 398970 SspI AATATT 1150771 1327.36 753 StuI AGGCCT 234443 270.42 3697 StyD4I CCNGG 2966265 3421.44 292 StyI CCWWGG 670214 773.06 1293 SwaI ATTTAAAT 82611 95.29 10494 TaqI TCGA 1364884 1574.33 635 TfiI GAWTC 1779859 2052.98 487 TseI GCWGC 3617040 4172.08 239 Tsp45I GTSAC 2451125 2827.25 353 TspMI CCCGGG 68871 79.44 12588 TspRI CASTG 3856954 4448.81 224 XbaI TCTAGA 171302 197.59 5061 XhoI CTCGAG 91332 105.35 9492 XmaI CCCGGG 68871 79.44 12588 ZraI GACGTC 142676 164.57 6076