# Astyanax mexicanus genome, 1191.243 Mbp of sequence in 10735 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 111935 93.96 10642 Acc65I GGTACC 123106 103.34 9676 AccI GTMKAC 816096 685.08 1459 AciI CCGC 3258823 2735.65 365 AclI AACGTT 289234 242.80 4118 AcuI CTGAAG 1465946 1230.60 812 AfeI AGCGCT 322944 271.10 3688 AflII CTTAAG 370379 310.92 3216 AflIII ACRYGT 1261943 1059.35 943 AgeI ACCGGT 88612 74.39 13443 AluI AGCT 9239273 7756.00 128 AlwI GGATC 1580381 1326.67 753 ApaI GGGCCC 121262 101.79 9823 ApaLI GTGCAC 440627 369.89 2703 ApeKI GCWGC 4297162 3607.29 277 ApoI RAATTY 3215666 2699.42 370 AscI GGCGCGCC 1295 1.09 919878 AseI ATTAAT 1615798 1356.40 737 AsiSI GCGATCGC 865 0.73 1377159 AvaI CYCGRG 361484 303.45 3295 AvaII GGWCC 1371401 1151.24 868 AvrII CCTAGG 105154 88.27 11328 BaeGI GKGCMC 939099 788.34 1268 BamHI GGATCC 137535 115.46 8661 BanI GGYRCC 537025 450.81 2218 BanII GRGCYC 929373 780.17 1281 BbvI GCAGC 4297162 3607.29 277 BccI CCATC 3111852 2612.27 382 BceAI ACGGC 863446 724.83 1379 BciVI GTATCC 391932 329.01 3039 BclI TGATCA 684121 574.29 1741 BcoDI GTCTC 2823781 2370.45 421 BfuAI ACCTGC 890578 747.60 1337 BfuCI GATC 4186900 3514.73 284 BglII AGATCT 477570 400.90 2494 BlpI GCTNAGC 439446 368.90 2710 BmrI ACTGGG 698059 585.99 1706 BmtI GCTAGC 377873 317.21 3152 BpmI CTGGAG 1299376 1090.77 916 BpuEI CTTGAG 625992 525.49 1902 BsaAI YACGTR 530014 444.93 2247 BsaHI GRCGYC 348113 292.23 3421 BsaI GGTCTC 521685 437.93 2283 BsaWI WCCGGW 418378 351.21 2847 BseRI GAGGAG 1365095 1145.94 872 BsgI GTGCAG 1322498 1110.18 900 BsiEI CGRYCG 163808 137.51 7272 BsiHKAI GWGCWC 1633980 1371.66 729 BsiWI CGTACG 39161 32.87 30419 BsmAI GTCTC 2823781 2370.45 421 BsmBI CGTCTC 345830 290.31 3444 BsmFI GGGAC 1423537 1195.00 836 BsmI GAATGC 707844 594.21 1682 BsoBI CYCGRG 361484 303.45 3295 Bsp1286I GDGCHC 2542805 2134.58 468 BspCNI CTCAG 4444152 3730.69 268 BspDI ATCGAT 139378 117.00 8546 BspEI TCCGGA 110118 92.44 10817 BspHI TCATGA 542660 455.54 2195 BspMI ACCTGC 890578 747.60 1337 BspQI GCTCTTC 237786 199.61 5009 BsrBI CCGCTC 301384 253.00 3952 BsrFI RCCGGY 381074 319.90 3126 BsrGI TGTACA 853137 716.17 1396 BsrI ACTGG 3679016 3088.39 323 BssHII GCGCGC 81299 68.25 14652 BssSI CACGAG 234200 196.60 5086 BstBI TTCGAA 121017 101.59 9843 BstEII GGTNACC 173202 145.40 6877 BstNI CCWGG 2582239 2167.69 461 BstUI CGCG 771290 647.47 1544 BstYI RGATCY 1154849 969.45 1031 BstZ17I GTATAC 312734 262.53 3809 Bsu36I CCTNAGG 250001 209.87 4764 BtgI CCRYGG 522207 438.37 2281 BtgZI GCGATG 226672 190.28 5255 BtsCI GGATG 2961225 2485.83 402 ClaI ATCGAT 139378 117.00 8546 CviAII CATG 7863115 6600.77 151 CviKI-1 RGCY 22105637 18556.79 53 CviQI GTAC 4464362 3747.65 266 DdeI CTNAG 6750546 5666.81 176 DpnII GATC 4186900 3514.73 284 DraI TTTAAA 2999060 2517.59 397 EaeI YGGCCR 733918 616.09 1623 EagI CGGCCG 74665 62.68 15954 EarI CTCTTC 1159608 973.44 1027 EciI GGCGGA 259015 217.43 4599 Eco53kI GAGCTC 397758 333.90 2994 EcoO109I RGGNCCY 628938 527.97 1894 EcoRI GAATTC 381235 320.03 3124 EcoRV GATATC 261032 219.13 4563 FatI CATG 7863115 6600.77 151 FauI CCCGC 762250 639.88 1562 Fnu4HI GCNGC 5090442 4273.22 234 FokI GGATG 2961225 2485.83 402 FseI GGCCGGCC 4251 3.57 280226 FspI TGCGCA 159740 134.10 7457 HaeII RGCGCY 665279 558.47 1790 HaeIII GGCC 3111302 2611.81 382 HgaI GACGC 768999 645.54 1549 HhaI GCGC 1903776 1598.14 625 HincII GTYRAC 949565 797.12 1254 HindIII AAGCTT 650024 545.67 1832 HinfI GANTC 4630726 3887.31 257 HinP1I GCGC 1903776 1598.14 625 HpaI GTTAAC 385577 323.68 3089 HpaII CCGG 1494608 1254.66 797 HphI GGTGA 2945669 2472.77 404 Hpy188I TCNGA 6862775 5761.02 173 Hpy99I CGWCG 277613 233.04 4291 HpyAV CCTTC 2756886 2314.29 432 HpyCH4III ACNGT 8239195 6916.47 144 HpyCH4IV ACGT 2478267 2080.40 480 HpyCH4V TGCA 10643268 8934.59 111 KasI GGCGCC 66163 55.54 18004 KpnI GGTACC 123106 103.34 9676 MboI GATC 4186900 3514.73 284 MboII GAAGA 4368240 3666.96 272 MfeI CAATTG 391251 328.44 3044 MluCI AATT 14107286 11842.50 84 MluI ACGCGT 42106 35.35 28291 MlyI GAGTC 2092799 1756.82 569 MmeI TCCRAC 925610 777.01 1286 MnlI CCTC 11692558 9815.43 101 MscI TGGCCA 434064 364.38 2744 MseI TTAA 17888125 15016.36 66 MspA1I CMGCKG 1287938 1081.17 924 MspI CCGG 1494608 1254.66 797 NaeI GCCGGC 105422 88.50 11299 NarI GGCGCC 66163 55.54 18004 NciI CCSGG 655954 550.65 1816 NcoI CCATGG 249247 209.23 4779 NdeI CATATG 468349 393.16 2543 NgoMIV GCCGGC 105422 88.50 11299 NheI GCTAGC 377873 317.21 3152 NlaIII CATG 7863115 6600.77 151 NmeAIII GCCGAG 268636 225.51 4434 NotI GCGGCCGC 3904 3.28 305133 NruI TCGCGA 32916 27.63 36190 NsiI ATGCAT 843453 708.04 1412 NspI RCATGY 2397624 2012.71 496 PacI TTAATTAA 110974 93.16 10734 PaeR7I CTCGAG 100591 84.44 11842 PciI ACATGT 819523 687.96 1453 PleI GAGTC 2092799 1756.82 569 PluTI GGCGCC 66163 55.54 18004 PmeI GTTTAAAC 39200 32.91 30388 PmlI CACGTG 158263 132.86 7526 PpuMI RGGWCCY 338384 284.06 3520 PsiI TTATAA 1400018 1175.26 850 PspGI CCWGG 2582239 2167.69 461 PspOMI GGGCCC 121262 101.79 9823 PspXI VCTCGAGB 29895 25.10 39847 PstI CTGCAG 1053950 884.75 1130 PvuI CGATCG 26550 22.29 44867 PvuII CAGCTG 837424 702.98 1422 RsaI GTAC 4464362 3747.65 266 RsrII CGGWCCG 24982 20.97 47684 SacI GAGCTC 397758 333.90 2994 SacII CCGCGG 64275 53.96 18533 SalI GTCGAC 62750 52.68 18983 SapI GCTCTTC 237786 199.61 5009 Sau3AI GATC 4186900 3514.73 284 Sau96I GGNCC 2579731 2165.58 461 SbfI CCTGCAGG 22985 19.29 51826 ScaI AGTACT 449097 377.00 2652 ScrFI CCNGG 3238193 2718.33 367 SexAI ACCWGGT 170141 142.83 7001 SfaNI GCATC 2761293 2317.99 431 SfcI CTRYAG 2791343 2343.22 426 SfoI GGCGCC 66163 55.54 18004 SgrAI CRCCGGYG 10601 8.90 112370 SmaI CCCGGG 72746 61.07 16375 SmlI CTYRAG 1096962 920.86 1085 SnaBI TACGTA 135551 113.79 8788 SpeI ACTAGT 378457 317.70 3147 SphI GCATGC 367608 308.59 3240 SrfI GCCCGGGC 2916 2.45 408519 SspI AATATT 2015294 1691.76 591 StuI AGGCCT 353202 296.50 3372 StyD4I CCNGG 3238193 2718.33 367 StyI CCWWGG 746943 627.03 1594 SwaI ATTTAAAT 122847 103.13 9696 TaqI TCGA 1447980 1215.52 822 TfiI GAWTC 2537927 2130.49 469 TseI GCWGC 4297162 3607.29 277 Tsp45I GTSAC 2567193 2155.05 464 TspMI CCCGGG 72746 61.07 16375 TspRI CASTG 6605157 5544.76 180 XbaI TCTAGA 357236 299.89 3334 XhoI CTCGAG 100591 84.44 11842 XmaI CCCGGG 72746 61.07 16375 ZraI GACGTC 111935 93.96 10642