# Amphilophus citrinellus genome, 844.903 Mbp of sequence in 6637 scaffolds # # ENZYME SPECIFICITY SITES_COUNT SITES_PER_MEGABASE AVE_FRAG_LENGTH (bp) # AatII GACGTC 96865 114.65 8722 Acc65I GGTACC 112822 133.53 7488 AccI GTMKAC 617354 730.68 1368 AciI CCGC 2483273 2939.12 340 AclI AACGTT 145643 172.38 5801 AcuI CTGAAG 1464263 1733.06 577 AfeI AGCGCT 171937 203.50 4914 AflII CTTAAG 296161 350.53 2852 AflIII ACRYGT 1124607 1331.05 751 AgeI ACCGGT 80400 95.16 10508 AluI AGCT 8017232 9488.94 105 AlwI GGATC 1614773 1911.19 523 ApaI GGGCCC 131221 155.31 6438 ApaLI GTGCAC 400659 474.21 2108 ApeKI GCWGC 4607705 5453.53 183 ApoI RAATTY 2614246 3094.14 323 AscI GGCGCGCC 724 0.86 1166992 AseI ATTAAT 873877 1034.29 966 AsiSI GCGATCGC 1485 1.76 568957 AvaI CYCGRG 369236 437.02 2288 AvaII GGWCC 1428872 1691.17 591 AvrII CCTAGG 90015 106.54 9386 BaeGI GKGCMC 885971 1048.61 953 BamHI GGATCC 169408 200.51 4987 BanI GGYRCC 574104 679.49 1471 BanII GRGCYC 902235 1067.86 936 BbvI GCAGC 4607705 5453.53 183 BccI CCATC 3271932 3872.56 258 BceAI ACGGC 706401 836.07 1196 BciVI GTATCC 349454 413.60 2417 BclI TGATCA 555579 657.57 1520 BcoDI GTCTC 2642449 3127.52 319 BfuAI ACCTGC 980120 1160.04 862 BfuCI GATC 3689651 4366.95 228 BglII AGATCT 370609 438.64 2279 BlpI GCTNAGC 359462 425.45 2350 BmrI ACTGGG 726261 859.58 1163 BmtI GCTAGC 165044 195.34 5119 BpmI CTGGAG 1207159 1428.76 699 BpuEI CTTGAG 683363 808.81 1236 BsaAI YACGTR 457412 541.38 1847 BsaHI GRCGYC 290493 343.82 2908 BsaI GGTCTC 478064 565.82 1767 BsaWI WCCGGW 298407 353.19 2831 BseRI GAGGAG 1375821 1628.38 614 BsgI GTGCAG 1318408 1560.43 640 BsiEI CGRYCG 134102 158.72 6300 BsiHKAI GWGCWC 1495268 1769.75 565 BsiWI CGTACG 23351 27.64 36182 BsmAI GTCTC 2642449 3127.52 319 BsmBI CGTCTC 292681 346.41 2886 BsmFI GGGAC 1502832 1778.70 562 BsmI GAATGC 657058 777.67 1285 BsoBI CYCGRG 369236 437.02 2288 Bsp1286I GDGCHC 2383688 2821.26 354 BspCNI CTCAG 4609623 5455.80 183 BspDI ATCGAT 102181 120.94 8268 BspEI TCCGGA 59395 70.30 14225 BspHI TCATGA 517329 612.29 1633 BspMI ACCTGC 980120 1160.04 862 BspQI GCTCTTC 232539 275.23 3633 BsrBI CCGCTC 228013 269.87 3705 BsrFI RCCGGY 325044 384.71 2599 BsrGI TGTACA 642061 759.92 1315 BsrI ACTGG 3477232 4115.54 242 BssHII GCGCGC 51927 61.46 16270 BssSI CACGAG 266652 315.60 3168 BstBI TTCGAA 62584 74.07 13500 BstEII GGTNACC 221996 262.75 3805 BstNI CCWGG 2729395 3230.43 309 BstUI CGCG 492846 583.32 1714 BstYI RGATCY 1027870 1216.55 821 BstZ17I GTATAC 189911 224.77 4448 Bsu36I CCTNAGG 273011 323.13 3094 BtgI CCRYGG 516197 610.95 1636 BtgZI GCGATG 203909 241.34 4143 BtsCI GGATG 3207353 3796.12 263 ClaI ATCGAT 102181 120.94 8268 CviAII CATG 7517588 8897.58 112 CviKI-1 RGCY 20644145 24433.76 40 CviQI GTAC 3393647 4016.61 248 DdeI CTNAG 6326436 7487.77 133 DpnII GATC 3689651 4366.95 228 DraI TTTAAA 1873071 2216.91 451 EaeI YGGCCR 650019 769.34 1299 EagI CGGCCG 43222 51.16 19547 EarI CTCTTC 1149857 1360.93 734 EciI GGCGGA 151628 179.46 5572 Eco53kI GAGCTC 367906 435.44 2296 EcoO109I RGGNCCY 745544 882.40 1133 EcoRI GAATTC 298437 353.22 2831 EcoRV GATATC 236023 279.35 3579 FatI CATG 7517588 8897.58 112 FauI CCCGC 589659 697.90 1432 Fnu4HI GCNGC 5206507 6162.26 162 FokI GGATG 3207353 3796.12 263 FseI GGCCGGCC 2606 3.08 324214 FspI TGCGCA 127205 150.56 6642 HaeII RGCGCY 436493 516.62 1935 HaeIII GGCC 3085743 3652.19 273 HgaI GACGC 626960 742.05 1347 HhaI GCGC 1263182 1495.06 668 HincII GTYRAC 863409 1021.90 978 HindIII AAGCTT 533220 631.10 1584 HinfI GANTC 4253885 5034.76 198 HinP1I GCGC 1263182 1495.06 668 HpaI GTTAAC 301688 357.07 2800 HpaII CCGG 1182929 1400.08 714 HphI GGTGA 3096139 3664.49 272 Hpy188I TCNGA 5832231 6902.84 144 Hpy99I CGWCG 237709 281.34 3554 HpyAV CCTTC 3037230 3594.77 278 HpyCH4III ACNGT 6533442 7732.78 129 HpyCH4IV ACGT 1863008 2205.00 453 HpyCH4V TGCA 10265637 12150.08 82 KasI GGCGCC 60735 71.88 13911 KpnI GGTACC 112822 133.53 7488 MboI GATC 3689651 4366.95 228 MboII GAAGA 4226138 5001.92 199 MfeI CAATTG 222061 262.82 3804 MluCI AATT 9562652 11318.05 88 MluI ACGCGT 36383 43.06 23222 MlyI GAGTC 2134168 2525.93 395 MmeI TCCRAC 826224 977.89 1022 MnlI CCTC 12085362 14303.85 69 MscI TGGCCA 413782 489.74 2041 MseI TTAA 11358885 13444.02 74 MspA1I CMGCKG 1524236 1804.04 554 MspI CCGG 1182929 1400.08 714 NaeI GCCGGC 82173 97.26 10281 NarI GGCGCC 60735 71.88 13911 NciI CCSGG 577982 684.08 1461 NcoI CCATGG 276351 327.08 3057 NdeI CATATG 409300 484.43 2064 NgoMIV GCCGGC 82173 97.26 10281 NheI GCTAGC 165044 195.34 5119 NlaIII CATG 7517588 8897.58 112 NmeAIII GCCGAG 205222 242.89 4117 NotI GCGGCCGC 1528 1.81 552946 NruI TCGCGA 16393 19.40 51540 NsiI ATGCAT 667612 790.16 1265 NspI RCATGY 2227061 2635.88 379 PacI TTAATTAA 54265 64.23 15569 PaeR7I CTCGAG 112827 133.54 7488 PciI ACATGT 716023 847.46 1179 PleI GAGTC 2134168 2525.93 395 PluTI GGCGCC 60735 71.88 13911 PmeI GTTTAAAC 23586 27.92 35822 PmlI CACGTG 185136 219.12 4563 PpuMI RGGWCCY 409956 485.21 2060 PsiI TTATAA 677687 802.09 1246 PspGI CCWGG 2729395 3230.43 309 PspOMI GGGCCC 131221 155.31 6438 PspXI VCTCGAGB 33881 40.10 24937 PstI CTGCAG 1197401 1417.21 705 PvuI CGATCG 26507 31.37 31874 PvuII CAGCTG 1147118 1357.69 736 RsaI GTAC 3393647 4016.61 248 RsrII CGGWCCG 17288 20.46 48872 SacI GAGCTC 367906 435.44 2296 SacII CCGCGG 35297 41.78 23936 SalI GTCGAC 63286 74.90 13350 SapI GCTCTTC 232539 275.23 3633 Sau3AI GATC 3689651 4366.95 228 Sau96I GGNCC 2692916 3187.25 313 SbfI CCTGCAGG 32472 38.43 26019 ScaI AGTACT 326589 386.54 2587 ScrFI CCNGG 3307377 3914.51 255 SexAI ACCWGGT 171514 203.00 4926 SfaNI GCATC 2651934 3138.75 318 SfcI CTRYAG 2365231 2799.41 357 SfoI GGCGCC 60735 71.88 13911 SgrAI CRCCGGYG 8210 9.72 102911 SmaI CCCGGG 72551 85.87 11645 SmlI CTYRAG 1092351 1292.87 773 SnaBI TACGTA 68324 80.87 12366 SpeI ACTAGT 203286 240.60 4156 SphI GCATGC 382331 452.51 2209 SrfI GCCCGGGC 2772 3.28 304798 SspI AATATT 1069962 1266.37 789 StuI AGGCCT 350122 414.39 2413 StyD4I CCNGG 3307377 3914.51 255 StyI CCWWGG 903265 1069.08 935 SwaI ATTTAAAT 68302 80.84 12370 TaqI TCGA 1238925 1466.35 681 TfiI GAWTC 2119717 2508.83 398 TseI GCWGC 4607705 5453.53 183 Tsp45I GTSAC 3071952 3635.87 275 TspMI CCCGGG 72551 85.87 11645 TspRI CASTG 6008328 7111.27 140 XbaI TCTAGA 219698 260.03 3845 XhoI CTCGAG 112827 133.54 7488 XmaI CCCGGG 72551 85.87 11645 ZraI GACGTC 96865 114.65 8722