| Eucarya |
| Intein Name |
Intein Size |
Endo Activity |
Endo Motif |
Location in Extein |
N-terminal Splice Junction |
C-terminal Splice Junction |
Insert Site |
| APMV Pol | 351 | | DOD | D1052 | FPGSEVIYGD/S | KN/TDSIFINFHI | pol-c, Pol Motif C |
| Abr PRP8 | 165 | | None | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a, same as A1578 in Sce PRP8 |
| Aca PRP8 | 535 | | DOD | A? | ------WEKA/C | HN/S--------- | PRP8-a, same as A1578 in Sce PRP |
| Afu-Af293 PRP8 | 819 | | DOD | A1522 | SWEGLFWERA/C | HN/SGFEESMKFK | PRP8-a, same as A1578 in Sce PRP8 |
| Afu-FRR0163 PRP8 | 819 | | DOD | A? | SWEGLFWERA/C | HN/SGFEESMKFK | PRP8-a, same as A1578 in Sce PRP8 |
| Ani-FGSCA4 PRP8 | 605 | | DOD | A1511 | SWEGLFWEKA/C | HN/SGFEESMKFK | PRP8-a |
| Avi PRP8 | 169 | | None | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a, same as A1578 in Sce PRP8 |
| Bci PRP8 | 838 | | DOD | A? | SWEGLFWEKA/C | HN/SGFEE----- | PRP8-a,same as A1578 in Sce PRP8 |
| Bde-JEL197 RPB2 | 488 | | DOD | V120? | QLHNTHWGMV/C | HN/CPAETPEGQA | RPB2-c, domain 3, V522 in Sce RPB2 |
| Bde-JEL423 PRP8-1 | 465 | | DOD | R781 | ILQHLSEAWR/C | HN/CWKANIPWKV | PRP8-b |
| Bde-JEL423 PRP8-2 | 465 | | DOD | A2034 | TWEGLFWEKA/C | HN/SGFEESMKFK | PRP8-a,same as A1578 in Sce PRP8 |
| Bde-JEL423 RPC2 | 488 | | DOD | I526 | SLQTSQWGMI/C | HN/CPSDTPEGEA | RPB2-c, RPC2-b |
| Bde-JEL423 eIF-5B | 419 | | DOD | K? | CILGHVDTGK/C | HN/TKLLDKIRQT | IF2-a, eIF-5B-a, same as K418 in Sce eIF-5B (P39730) |
| CIV RIR1 | 339 | | DOD | L271 | KGLTIKQSNL/C | GQ/CSEIILPTDS | RIR1-i |
| CV-NY2A ORF212392 | 391 | | DOD | K438 | LAFHSVGSGK/C | HN/TVSALGIALA | ORF212392-a, ATP/GTP-binding site motif A (P-loop) |
| CV-NY2A RIR1 | 336 | | DOD | L436 | NAGTIRGSNL/C | GQ/CNEIVEYTSK | RIR1-i |
| CZIV RIR1 | 139 | | None | L161 | LGLNIKQSNL/C | GQ/CSEIILPTDE | RIR1-i |
| Cba-WM02.98 PRP8 | 170 | | None | A? | TWEGLFWEKA/C | HN/SGFEESMKNK | PRP8-a, same as A1578 in Sce PRP8 |
| Cba-WM728 PRP8 | 170 | | None | A? | TWEGLFWEKA/C | HN/SGFEESMKNK | PRP8-a, same as A1578 in Sce PRP8 |
| Ceu ClpP | 456 | | DOD | E447 | GCHVMIHQPE/C | GN/SSIQCQASDI | clpP-a, Endopeptidase active site |
| Cga PRP8 | 170 | | None | A? | TWEGLFWEKA/C | HN/SGFEESMKNK | PRP8-a, same as A1578 in Sce PRP8 |
| Cgl VMA | 415 | | DOD | G276 | SNSDTIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Cla PRP8 | 522 | | DOD | S59? | TWEGLFWEKS/C | HN/SGFEESMKFK | PRP8-a,same as A1578 in Sce PRP8 |
| Cne-A PRP8 (Fne-A PRP8) | 171 | | None | A? | TWEGLFWEKA/C | HN/SGFEE----- | PRP8-a, same as A1578 in Sce PRP8 |
| Cne-AD PRP8 (Fne-AD PRP8) | 172 | | None | A? | TWEGLFWEKA/C | HN/SGFEESMKNK | PRP8-a, same as A1578 in Sce PRP8 |
| Cne-JEC21 PRP8 | 172 | | None | A1530 | TWEGLFWEKA/C | HN/SGFEESMKNK | PRP8-a, same as A1578 in Sce PRP8 |
| Cpa ThrRS | 182 | | None | N399 | KETFGLKPMN/C | GN/CPGHCILFKS | thrRS-a |
| Cre RPB2 | 431 | | DOD | D1085 | GLRFGEMERD/C | GN/CIISHGAAAF | RPB2-a, D1136 in Sce RPB2 CAA99357 |
| Cst RPB2 | 362 | | DOD | H692? | LKHMVDDKIH/C | GN/SRSRGPLQIL | RPB2-b, domain 6, H1104 in Sce RPB2 |
| Ctr ThrRS | 345 | | | N399 | KETFGLKPMN/C | GN/CPGHAVMFKS | thrRS-a |
| Ctr VMA | 471 | | DOD | G283 | SNSDVIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Ddi RPC2 | 464 | | | A505 | CPSDTPEGEA/C | HN/CGLVKNFALM | RPC2-a |
| Dhan GLT1 | 607 | | DOD | R1183 | IALGCIMMRR/C | AN/CHLNTCPVGI | GLT1-a |
| Dhan VMA | 394 | | DOD | G271 | SNSDLMVYIG/C | HN/CGERGNEMAE | VMA-a |
| Eni PRP8 | 605 | | DOD | A? | -WEGLFWEKA/C | HN/SGFE------ | PRP8-a, same as A1578 in Sce PRP8 |
| Eni-FGSCA4 PRP8 | 605 | | DOD | A1525 | SWEGLFWEKA/C | HN/SGFEESMKFK | PRP8-a |
| Gth DnaB | 160 | | None | G376 | PILSDLKESG/C | HN/SIEQDADVVL | dnaB-a |
| HaV01 Pol | 232 | | | D646 | YPDAKVIYGD/S | KN/TDSVYVNFPS | pol-c, Pol Motif C |
| Hca PRP8 | 534 | | DOD | A? | TWEGLFWEKA/C | HN/SGFEESMKNK | PRP8-a, same as A1578 in Sce PRP |
| IIV6 RIR1 | 339 | | DOD | L271 | KGLTIKQSNL/C | GQ/CSEIILPTDS | RIR1-i |
| Kex-CBS379 VMA | 502 | | DOD | G18? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Kla-CBS683 VMA | 410 | | DOD | G18? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Kla-IFO1267 VMA | 410 | | DOD | G276 | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Kla-NRRLY1140 VMA | 410 | | DOD | G283 | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Lel VMA | 421 | | DOD | G279 | SNSDVIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Nau PRP8 | 164 | | None | A? | SWEGLFWERA/C | HN/SGFEESMKFK | PRP8-a, same as A1578 in Sce PRP8 |
| Nfi PRP8 | 517 | | DOD | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a,same as A1578 in Sce PRP8 |
| Ngl-FR2163 PRP8 | 155 | | None | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a, same as A1578 in Sce PRP8 |
| Ngl-FRR1833 PRP8 | 169 | | None | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a, same as A1578 in Sce PRP8 |
| Nqu PRP8 | 169 | | None | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a, same as A1578 in Sce PRP8 |
| Nspi PRP8 | 169 | | None | A? | SWEGLFWERA/C | HN/SGFEESMK-- | PRP8-a, same as A1578 in Sce PRP8 |
| Pan CHS2 | 649 | | DOD | T562 | IAKNYVNQKT/C | HN/CTAHVYEYTT | CHS2-a |
| Pan GLT1 | 682 | | DOD | K1194 | IAMGCIMMRK/C | HN/CHLNTCPVGI | GLT1-a |
| Pbl PRP8-a | 198 | | None | A1513 | SWLGLFWEKA/C | HN/SGFEESMKYK | PRP8-a,same as A1578 in Sce PRP8 |
| Pbl PRP8-b | 198 | | None | A1512 | SWLGLFWEKA/C | HN/SGFEESMKYK | PRP8-a,same as A1578 in Sce PRP8 |
| Pbr PRP8 | 573 | | DOD | A? | SWEGLFWERA/C | HN/SGFEESMKFK | PRP8-a, same as A1578 in Sce PRP8 |
| Pch PRP8 | 157 | | None | A? | ------WEKA/C | HN/SGFE------ | PRP8-a, same as A1578 in Sce PRP8 |
| Pex PRP8 | 162 | | None | A? | ------WEKA/C | HN/SGFE------ | PRP8-a, same as A1578 in Sce PRP8 |
| Pgu GLT1 | 553 | | DOD | K1186 | IAMGCIMMRK/C | AN/CHLNTCPVGI | GLT1-a |
| Pgu-alt GLT1 | 553 | | DOD | K? | IAMGCIMMRK/C | SN/CHLNTCPVGI | GLT1-a, R1183 of Dha GluSyn |
| Pno GLT1 | 635 | | DOD | K? | IAMGCIMMRK/C | SN/CHLNTCPVGI | GLT1-a, R1183 of Dha GluSyn |
| Pno RPA2 | 456 | | | Q? | FNQSPRNMYQ/C | GN/CQMGKQSMGT | RPA-a, Q691 of C. albicans XP_720354 |
| Ppu DnaB | 150 | | None | G361 | PLLSDLRESG/C | HN/SIEQDADLVI | dnaB-a |
| Pst VMA | 449 | | DOD | G282 | SNSDVIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Ptr PRP8 | 844 | | DOD | A1565 | SWEGLFWEKA/C | HN/SGFEESMKFK | PRP8-a,same as A1578 in Sce PRP8 |
| Pvu PRP8 | 161 | | None | A? | ------WEKA/C | HN/SGFE------ | PRP8-a, same as A1578 in Sce PRP8 |
| Pye DnaB | 148 | | None | G361 | PLLSDLRESG/C | HN/SIEQDADLVI | dnaB-a |
| Sas RPB2 | 354 | | DOD | H697? | LKHMVDDKIH/C | GN/SRARGPV--- | RPB2-b, domain 6, H1104 in Sce RPB2 |
| Sca-CBS4309 VMA | 517 | | DOD | G18? | SNSDSIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Sca-IFO1992 VMA | 517 | | DOD | G265 | SNSDSIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Scar VMA | 454 | | DOD | G18? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Sce VMA | 454 | PI-SceI | DOD | G283 | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Sce-DH1-1A VMA | 454 | | DOD | G28? | SNSDAIIYVGlC | HN/CGERGNEMAE | VMA-a |
| Sce-OUT7091 VMA | 454 | | DOD | G258 | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Sce-OUT7112 VMA | 454 | | DOD | G258 | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Sda VMA | 501 | | DOD | G18? | SNSDTIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Sex-IFO1128 VMA | 499 | | DOD | G267? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| She RPB2 (RpoB) | 390 | | DOD | H578 | LVHLVDEKIH/C | GN/SRSSGPYSLI | RPB2-b |
| Sja VMA | 476 | | DOD | G284 | SNSDLIVYVG/C | HN/CGERGNEMAE | VMA-a |
| Spa VMA | 454 | | DOD | G269 | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Spu PRP8 | 473 | | DOD | H? | KGMLDPLEVH/C | HN/CLDFPNIVIK | PRP8-c, same as H1947 in Sce PRP8 |
| Sun VMA | 414 | | DOD | G18? | SNSDTIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Tgl VMA | 456 | | DOD | G18? | SNSDVIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Tpr VMA | 455 | | DOD | G18? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Ure PRP8 | 180 | | None | A? | SWEGLFWERA/C | HN/SGFEE----- | PRP8-a,same as A1578 in Sce PRP8 |
| Vpo VMA | 433 | | DOD | G18? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| WIV RIR1 | 138 | | None | L173 | LGLRVKQSNL/C | SN/CSEIILPTDE | RIR1-i |
| Zba VMA | 456 | | DOD | G18? | SNSDAIIYVG/C | HN/CGERGNEMAE | VMA-a |
| Zbi VMA | 450 | | DOD | G18? | SNSDAIVYVG/C | HN/CGERGNEMAE | VMA-a |
| Zro VMA | 450 | | DOD | G18? | SNSDAIVYVG/C | HN/CGERGNEMAE | VMA-a |
| Eubacteria |
| Intein Name |
Intein Size |
Endo Activity |
Endo Motif |
Location in Extein |
N-terminal Splice Junction |
C-terminal Splice Junction |
Insert Site |
| AP-APSE1 dpol | 306 | | None | S608 | ERLKTYGGKS/C | HN/CENICQAAAR | dpol-a |
| Aae RIR2 | 346 | | DOD | L229 | QIKYINRDEL/C | GN/CHVTLFRNII | RIR2-a, Metal binding site |
| Aave Hyp-1721 | 333 | | DOD | F2211 | ARGAVGGALF/C | HN/TFKTYSVSYL | Aave_1721-a |
| Aave RIR | 388 | | DOD | P301 | YCESIAATNP/C | HN/CGEQPLPSYG | RIR1-b |
| Ace RIR1 | 153 | | None | A156 | GTPAKQQVSA/C | HN/CFILSVDDTM | RIR1-j |
| Aeh DnaB-1 | 501 | | DOD | K226 | IVAGRPSMGK/C | HN/TTWAMNIVEH | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Aeh DnaB-2 | 418 | | DOD | E892 | KRPVMSDLRE/C | HN/SGAIEQDADV | dnaB-c |
| Aeh RIR1 | 377 | | DOD | P325 | FCEDIRATNP/C | HN/CGEQPLPPYG | RIR1-b |
| Aha DnaE-c | 36 | | None | None | FDQMIKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Aha DnaE-n | 110 | | None | Y602 | FDQMIKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Aov DnaE-c | 36 | | None | None | FQQMLNFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Aov DnaE-n | 101 | | None | Y402 | FQQMLNFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Arsp-FB24 DnaB | 332 | | DOD | E? | GLVTTATASE/G | HN/TRQLPPLPAQ | dnaB-h |
| Asp DnaE-c | 36 | | None | None | FDDMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Asp DnaE-n | 102 | | None | Y775 | FDDMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ava DnaE-c | 36 | | None | None | FEDMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ava DnaE-n | 103 | | None | Y775 | FEDMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Avin RIR1 BIL | 378 | | DOD | Q442 | VNDTAVAVNQ/C | HN/GGKRKGAVCA | RIR1-h |
| Bce DnaB | 347 | | DOD | K226 | IVAGRPSMGK/A | HN/TAFSMNIGEY | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| BsuP-M1918 RIR1 | 385 | | DOD | L30? | HISKVKFSNL/C | GN/CSEVLQSSQV | RIR1-i |
| BsuP-SPBc2 RIR1 | 385 | | DOD | L380 | HISKVKFSNL/C | GN/CSEVLQSSQV | RIR1-i |
| Cag RIR1 | 370 | | DOD | P453 | QSGRINASNP/C | HN/CSEYMFLDDT | RIR1-b |
| Cau SpoVR | 276 | | *DOD | A280 | MTKILNEGWA/C | HN/SYWHSTIMTQ | Chlo1563-a |
| CbP-C-St RNR | 330 | | DOD | C333 | ATSIDALASC/C | HN/CRLTSSSKEI | RNR-c |
| CbP-D RNR | 330 | | DOD | C333 | ATSIDALASC/C | HN/CRLTSSSKEI | RNR-c |
| Cbu DnaB | 146 | | None | E389 | KRPVMSDLRE/C | HN/SGIEQDADLI | dnaB-c |
| Cch RIR1 | 370 | | DOD | P453 | QSGRINASNP/C | HN/CSEYMFLDDT | RIR1-b |
| Chy RIR1 | 345 | | DOD | P239 | ELGEIESTNP/C | LD/CGEQPLLPYE | RIR1-b |
| Ckl PTerm | 402 | | DOD | K146 | LIFVGRKNGK/A | HN/TTLISGISNY | PTerm-a |
| Cth ATPase BIL | 135 | | None | K310 | FSAGAASTMK/C | HN/VKYNDGSNKI | Cth_ATPase-a |
| Cth TerA | 333 | | DOD | K67 | YVEIPKKNGK/Q | HN/SELAAAVALY | terA-a |
| Cwa DnaB | 496 | | DOD | K213 | IIAGRPSMGK/C | HN/TAFGLGVAAN | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Cwa DnaE-c | 36 | | None | None | FEQMIKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Cwa DnaE-n | 106 | | None | Y774 | FEQMIKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Cwa PEP | 394 | | DOD | T453 | AIVTNQGGRT/C | CN/CHAAIIAREM | PEPsyn-a |
| Cwa RIR1 | 347 | | DOD | L462 | HVGYIPGVNL/C | GQ/CTESFSNVTP | RIR1-i |
| Dge DnaB | 401 | | DOD | K215 | VLAARPSMGK/C | HN/TAFALSIAQN | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Dha-DCB2 RIR1 | 366 | | DOD | P241 | QLGEIEATNP/C | HN/CGEQPLLPNE | RIR1-b |
| Dha-Y51 RIR1 | 366 | | DOD | P283 | QLGEIEATNP/C | HN/CGEQPLLPNE | RIR1-b |
| Dra RIR1 | 366 | | DOD | P464 | ERYEIRSTNP/C | HN/CGEIPLTVGE | RIR1-b |
| Dra Snf2-c | 343 | | DOD | None | ILADDMGLGK/A | HN/TLQTLAHLLK | snf2-a, ATP/GTP-binding site motif A (P-loop) |
| Dra Snf2-n | 343 | | DOD | K693 | ILADDMGLGK/A | HN/TLQTLAHLLK | snf2-a, ATP/GTP-binding site motif A (P-loop) |
| Dra-ATCC13939 Snf2 | 343 | | DOD | K693 | ILADDMGLGK/A | HN/TLQT------ | snf2-a, ATP/GTP-binding site motif A (P-loop) |
| Dvul ParB | 288 | | | P286 | GHYHWMHEP/C | HN/CWYAVKGQAH | ParB-a |
| Fal DnaB | 408 | | DOD | K256 | IVAARPAVGK/A | HN/STLGLDFARA | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Fsp-CcI3 RIR1 | 294 | | None | A154 | GTPAPQQVSA/C | HN/CFILSVDDTM | RIR1-j |
| Gob DnaE | 446 | | DOD | K306 | VKFGGYGFNK/C | HN/SHTAAYAQIG | dnaE-c |
| Gob Hyp | 287 | | | P286 | RQDYHWKHEP/C | HN/CLYGWIDGAA | Gob_hyp-a |
| Gvi DnaB | 258 | | None | K221 | IVAGRPGMGK/C | HN/TAFSLSIAQR | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Gvi RIR1-1 | 413 | | DOD | K193 | TSKKITTGNK/C | SN/SRRGAFMFSM | RIR1-e |
| Gvi RIR1-2 | 367 | | DOD | P755 | IKNFITTTNP/C | HN/CGEIWLPPNS | RIR1-b |
| Hhal DnaB-1 | 492 | | DOD | K225 | IVAGRPSMGK/C | HN/TTVAMNMVEH | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Hhal DnaB-2 | 145 | | NONE | E883 | NKRPIMSDLRE/C | HN/SGAIEQDADL | dnaB-c |
| Kra DnaB | 428 | | DOD | G416 | PMVSDLRESG/C | HN/SIEQDADMVI | dnaB-a |
| LP-phiHSIC Helicase | 339 | | DOD | G34 | DPCVVDAATG/C | HN/CGKSVIIAEI | helicase-c |
| MP-Aaphi23 MupF | 325 | | | N256 | EVGNPGHDFN/C | SN/CRCVAIPVFD | mupF-a |
| MP-Be DnaB | 341 | | DOD | Q140 | VTIAAVSQDQ/P | HN/TKNTFSLFPI | dnaB-d |
| MP-Be gp51 | 317 | | | D94 | WIGAHEGNHD/C | GN/SRARDYLSKN | MP-U2_gp51-a |
| MP-Catera gp206 | 331 | | DOD | K149 | NGQVIPVELK/S | HN/TQNSRSFDFQ | MP-Catera_gp206-a |
| MP-Mcjw1 DnaB | 331 | | DOD | K92 | WIELARKNGK/A | HN/TELLAGIMLY | dnaB-f, ATP/GTP-binding site motif A (P-loop) |
| MP-Omega DnaB | 340 | | DOD | K106 | LIIHSAHEFK/A | HN/TAVNGMERLE | dnaB-e |
| MP-U2 gp50 | 317 | | | D94 | WIGAHEGNHD/C | GN/SRARDYLSKN | MP-U2_gp51-a |
| Mav DnaB | 337 | | DOD | K232 | IVAARPGVGK/A | HN/STLGLDFLRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mav-104 DnaB | 337 | | DOD | K232 | IVAARPGVGK/A | HN/STLGLDFLRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mav-PT DnaB | 417 | | DOD | K232 | IVAARPGVGK/A | HN/STLGLDFLRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mbo Pps1 | 359 | | DOD | G252 | EGSYVHYVEG/C | HN/CTAPIYKSDS | SufB-b |
| Mbo RecA | 440 | | DOD | K251 | RTRVKVVKNK/C | HN/CSPPFKQAEF | recA-a |
| Mbo SufB (Mbo Pps1) | 359 | | DOD | G252 | EGSYVHYVEG/C | HN/CTAPIYKSDS | SufB-b |
| Mbo-1173P DnaB | 416 | | DOD | G399 | PMLADLRESG/C | HN/SLEQDADVVI | dnaB-a |
| Mbo-AF2122 DnaB | 416 | | DOD | G399 | PMLADLRESG/C | HN/SLEQDADVVI | dnaB-a |
| Mca MupF | 314 | | unknown | N183 | NTIWPPNGFN/C | HN/CRCRVRPRSE | mupF-a |
| Mca RIR1 | 380 | | DOD | P282 | YCERIEATNP/C | HN/CAEQPLPAYG | RIR1-b |
| Mch RecA | 364 | | DOD | G? | -REKIGVMFG/C | HN/SPETTTGGKA | recA-b |
| Mex Helicase | 270 | | | E119 | PPFDIVVVDE/C | HN/CHRWFEMLGQ | helicase-b |
| Mex TrbC | 365 | | | K51 | IVLGTTGAGK/A | HN/TETLLGFAAN | trbC-a, ATP/GTP-binding site motif A (P-loop) |
| Mfa RecA | 363 | | DOD | G? | -REKIGVMFG/C | HN/SPETTTGGKA | recA-b |
| Mfl GyrA | 421 | | DOD | Y? | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mfl RecA | 364 | | DOD | G205 | LREKIGVMFG/C | HN/SPETTTGGKA | recA-b |
| Mfl-ATCC14474 RecA | 364 | | DOD | G? | -REKIGVMFG/C | HN/SPETTTGGKA | recA-b |
| Mfl-PYR-GCK DnaB | 417 | | DOD | K235 | VVAARPGMGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mga GyrA | 420 | | DOD | Y? | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mga RecA | 368 | | DOD | G? | -RDKIGVMFG/C | HN/SPETTTGGKA | recA-b, same as G205 in Mga ATCC 15754 RecA |
| Mga SufB (Mga Pps1) | 378 | PI-MgaI | DOD | E ? | LVAGVAAQYE/C | NN/SEVVY----- | SufB-c |
| Mgi-PYR-GCK DnaB | 417 | | DOD | K235 | VVAARPGMGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mgi-PYR-GCK GyrA | 421 | | DOD | Y130 | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mgo GyrA | 420 | | DOD | Y? | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Min DnaB | 335 | | DOD | K233 | IVAARPGVGK/A | HN/STLGLDFLRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mkas GyrA | 420 | | DOD | Y? | GNVPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mle DnaB | 145 | | None | K233 | IVAARPGVGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mle GyrA | 420 | | DOD | Y130 | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mle RecA | 365 | | DOD | G205 | LREKIGVMFG/C | HN/SPETTTGGKA | recA-b, Disordered loop 2 that interacts with DNA |
| Mle SufB (Mle Pps1) | 386 | | DOD | G201 | ALNTAVWSGG/C | HN/SFIYVPPGVH | SufB-a |
| Mma GyrA | 420 | | DOD | Y? | GNNPPAAMRY/C | HN/TEAR------ | gyrA-a, After active site Tyr |
| Mmag Magn8951 BIL | 141 | | None | S171 | QQSTPAPSVS/C | HN/YGDGPTREQF | Magn8951-a |
| Msh RecA | 364 | | DOD | G? | -REKIGVMFG/C | HN/SPETTTGGKA | recA-b |
| Msm DnaB-1 | 139 | | None | K237 | IIAARPGVGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Msm DnaB-2 | 425 | | DOD | G543 | PQVSDLRESG/C | HN/SLEQDADMVM | dnaB-a |
| Msp-KMS DnaB | 322 | | DOD | K233 | VIAARPGMGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Msp-KMS GyrA | 421 | | DOD | Y130 | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Msp-MCS DnaB | 322 | | DOD | K233 | VIAARPGMGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Msp-MCS GyrA | 421 | | DOD | Y130 | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mthe RecA | 365 | | DOD | G? | -REKIGVMFG/C | HN/SPETTTGGKA | recA-b |
| Mtu SufB (Mtu Pps1) | 359 | | DOD | G252 | EGSYVHYVEG/C | HN/CTAPIYKSDS | SufB-b |
| Mtu-CDC1551 DnaB | 416 | | DOD | G399 | PMLADLRESG/C | HN/SLEQDADVVI | dnaB-a |
| Mtu-F11 DnaB | 416 | | DOD | G399 | PMLADLRESG/C | HN/SLEQDADVVI | dnaB-a |
| Mtu-H37Ra DnaB | 416 | | DOD | G399 | PMLADLRESG/C | HN/SLEQDADVVI | dnaB-a |
| Mtu-H37Rv DnaB | 416 | | DOD | G399 | PMLADLRESG/C | HN/SLEQDADVVI | dnaB-a |
| Mtu-H37Rv RecA | 440 | | DOD | K251 | RTRVKVVKNK/C | HN/CSPPFKQAEF | recA-a |
| Mtu-So93 RecA | 440 | | DOD | K251 | RTRVKVVKNK/C | HN/CSPPFKQAEF | recA-a |
| Mvan DnaB | 416 | | DOD | K221 | VVAARPGMGK/A | HN/STLGLDFMRS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Mvan GyrA | 421 | | DOD | Y130 | GNDPPAAMRY/C | HN/TEARLTPLAM | gyrA-a, After active site Tyr |
| Mxa RAD25 | 436 | | DOD | K175 | TAVLPCGGGK/C | HN/TMLALGAVAR | rad25-a,ATP/GTP-binding site motif A (P-loop) |
| Mxe GyrA | 198 | | None | Y? | GNDPPAAMRY/C | HN/TEAPLTPLAM | gyrA-a, After active site Tyr |
| Nfa DnaB | 425 | | DOD | G400 | PMVSDLRESG/C | HN/SLEQDADMVI | dnaB-a |
| Nfa Nfa15250 | 313 | | | N197 | WSRGFRRHPN/C | SN/CNCRHIPSRE | Nfa15250-a |
| Nfa RIR1 | 409 | | DOD | S156 | GKKQRGEPVS/C | HN/CFLLRIEDNM | RIR1-j |
| Npu DnaB | 429 | | DOD | G388 | PMLSDLRESG/C | HN/SIEQDADLVI | dnaB-a |
| Npu DnaE-c | 36 | | None | None | FEQMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Npu DnaE-n | 102 | | None | Y774 | FEQMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Npu GyrB | 322 | | HNH | G77 | IPAAVGVDIG/C | HN/CGMSAIKTSF | gyrB-b |
| Nsp-JS614 DnaB | 352 | | DOD | K246 | IVAARPAMGK/A | HN/STLALDLCRA | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Nsp-JS614 TOPRIM | 312 | | DOD | H61 | NVNPSRGFFH/C | GN/CFGCSEGGNV | TOPRIM-a |
| Nsp-PCC7120 DnaB | 429 | | DOD | G388 | PMLSDLRESG/C | HN/SIEQDADLVI | dnaB-a |
| Nsp-PCC7120 DnaE-c | 36 | | None | None | FDDMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Nsp-PCC7120 DnaE-n | 102 | | None | Y775 | FDDMLKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Nsp-PCC7120 RIR1 | 407 | | DOD | R275 | VTIVAGNIRR/C | HN/SAGMRQFISD | RIR1-d |
| Oli DnaE-c | 36 | | None | None | FEQMVKFAEY/C | SN/CFNKSHSMAY | dnaE-a, Beta and tau binding domains |
| Oli DnaE-n | 112 | | None | Y25? | FEQMVKFAEY/C | SN/CFNKSHSMAY | dnaE-a, Beta and tau binding domains |
| PP-PhiEL Helicase | 262 | | | K151 | LLDAKPGSGK/A | HN/TFTSLAWSQL | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| PP-PhiEL ORF11 | 313 | | | K181 | YMIMPRQQGK/Q | HN/TVSVQVIDFW | PP-PhiEL_ORF11-a |
| PP-PhiEL ORF39 | 366 | | DOD | K246 | MLGERNAAGK/A | HN/SLTNNGKALK | PP-PhiEL_ORF39-a |
| PP-PhiEL ORF40 | 248 | | | K144 | VNNASTGFGK/M | HN/TYMAIHSMVK | PP-PhiEL_ORF40-a |
| Pfl Fha BIL | 148 | | None | C2585 | EAKLAGYKPC/C | HN/VGPCYSCSNG | fha-a |
| Plut RIR1 | 370 | | DOD | P453 | AAGRINASNP/C | NC/SEYMFLDNTA | RIR1-b |
| Pna RIR1 | 374 | | DOD | P297 | YCEAIAATNP/C | GQ/CGEQPLPPYG | RIR1-b |
| Pnuc DnaB | 352 | | DOD | K238 | VAGRPSMGK/A | HN/TAFALNIAEN | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Posp-JS666 DnaB | 351 | | DOD | K234 | ILAARPSMGK/A | HN/TALAINIAEH | dnaB-b,ATP/GTP-binding site motif A (P-loop) |
| Posp-JS666 RIR1 | 380 | | DOD | P297 | YCESIEATNP/C | HN/CGEQPLPPYG | RIR1-b |
| Pssp-A1-1 Fha | 148 | | None | R? | EGAKVPPCPR/C | HN/TGGPCDIPVG | fha-a |
| Psy Fha | 148 | | None | C5986 | GRKFAMDGPC/C | HN/TGPCELPEGY | fha-a |
| Rma DnaB | 428 | | DOD | G420 | PQLSDLRESG/C | HN/SIEQDADVVL | dnaB-a |
| Rsp RIR1 | 372 | | DOD | P265 | YCETIAATNP/C | HN/CGEQPLPPYG | RIR1-b |
| SaP-SETP12 dpol | 299 | | | A447 | RKDLRQIGKA/C | HN/CELGLGYEGG | dpol-b |
| SaP-SETP3 Helicase | 348 | | DOD | K33 | NIWASMGSGK/C | HN/TSSTLWVLNR | helicase-d |
| SaP-SETP3 dpol | 299 | | | A447 | RKDLRQIGKA/C | HN/CELGLGYEGG | dpol-b |
| SaP-SETP5 dpol | 299 | | | A447 | RKDLRQIGKA/C | HN/CELGLGYEGG | dpol-b |
| Sav Helicase | 338 | | DOD | K310 | LLQGEVGSGK/A | HN/TMVALRAMLA | snf2-a, ATP/GTP-binding site motif A (P-loop) |
| Sel-PC6301 RIR1 | 370 | | DOD | P409 | HRLQRYGLNP/C | HN/CGEILGADFH | RIR1-b |
| Sel-PC7942 DnaE-c | 36 | | None | None | FDQMVLFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Sel-PC7942 DnaE-n | 113 | | None | Y757 | FDQMVLFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Sel-PC7942 RIR1 | 370 | | DOD | P409 | HRLQRYGLNP/C | HN/CGEILGADFH | RIR1-b |
| Sel-PCC6301 DnaE-c | 36 | | None | None | FDQMVLFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Sel-PCC6301 DnaE-n | 113 | | None | Y757 | FDQMVLFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Sep RIR1 | 384 | | HNH | L377 | ELGEIKMSNL/C | GN/CTEIFQYMHV | RIR1-i |
| ShP-Sfv-2a-2457T-n Primase | | | DOD | K371 | LVNGVNGHGK/A | ? | primase-a, ATP/GTP-binding site motif A (P-loop) |
| ShP-Sfv-2a-301-n Primase | | | DOD | K371 | LVNGVNGHGK/A | ? | primase-a, ATP/GTP-binding site motif A (P-loop) |
| ShP-Sfv-5 Primase | 342 | | DOD | K371 | LVNGVNGHGK/A | HN/TEVVGHMALE | primase-a, ATP/GTP-binding site motif A (P-loop) |
| Spl DnaX | 136 | | None | E129 | CRYKVYVIDE/C | HN/CHMLSTAAFN | helicase-b, putative helicase DEAD-box motif |
| Sru DnaB | 344 | | DOD | K230 | IIAARPSMGK/C | HN/TAFALASAQN | dnaB-b,ATP/GTP-binding site motif A (P-loop) |
| Sru PolBc | 358 | | | N498 | RQSSYKVLIN/C | GQ/SFYGLLGFGL | pol-b, Pol Motif B |
| Sru RIR1 | 372 | | DOD | L260 | KGYDVHASNL/C | FN/CSEIALPSGP | RIR1-i |
| Ssp DnaB | 429 | | DOD | G380 | PMMSDLRESG/C | HN/SIEQDADLIM | dnaB-a |
| Ssp DnaE-c | 36 | | None | None | FDQMVKFAEY/C | AN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ssp DnaE-n | 123 | | None | Y774 | FDQMVKFAEY/C | AN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ssp DnaX | 430 | | *DOD | E129 | CRYKVYVIDE/C | HN/CHMLSTAAFN | helicase-b, putative helicase DEAD-box motif |
| Ssp GyrB | 435 | | HNH | G436 | FIVEGDSAGG/C | HN/SAKQGRDRRF | gyrB-a, Signature for DNA topoisomerase II |
| Ssp-JA2 DnaB | 141 | | None | G388 | PQLADLRESG/C | HN/SIEQDADLVM | dnaB-a |
| Ssp-JA2 RIR1 | 369 | | DOD | P410 | DRLWRYGLNP/C | HN/CGEIIGHTFH | RIR1-b |
| Ssp-JA3 DnaB | 141 | | None | G388 | PQLADLRESG/C | HN/SIEQDADVVM | dnaB-a |
| Ssp-JA3 RIR1 | 369 | | DOD | P423 | HRVQRYGLNP/C | HN/CGEIIGCDFH | RIR1-b |
| StP-Twort ORF6 | 420 | | | K147 | VLKIATNGGK/C | HN/TECASGIIDQ | SP-Twort_ORF6-a |
| Susp-NBC371 DnaB intein | 344 | | DOD | K205 | IIAARPAMGK/C | HN/TALVLNMALR | dnaB-b,ATP/GTP-binding site motif A (P-loop) |
| Tel DnaE-c | 35 | | None | None | FKQMLDFAEY/C | AN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Tel DnaE-n | 118 | | None | Y755 | FKQMLDFAEY/C | AN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ter DnaB-1 | 1986 | | DOD | K212 | IVAGRPSMGK/C | HN/TSFAVNIAHS | dnaB-b, ATP/GTP-binding site motif A (P-loop) |
| Ter DnaB-2 | 177 | | None | G2366 | PMMSDLRESG/C | HN/SIEQDADLVI | dnaB-a |
| Ter DnaE-1 | 1365 | | None | L719 | PILKETYGVL/C | HN/CYQEQIMKMA | dnaE-d |
| Ter DnaE-2 | 428 | | DOD | R2110 | SLGEADLLRR/C | HN/CMGKKKVSEM | dnaE-b |
| Ter DnaE-3c | 36 | | None | L719 | FEQMIKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ter DnaE-3n | 102 | | None | Y2582 | FEQMIKFAEY/C | SN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Ter GyrB | 244 | | HNH | G439 | YLVEGDSASG/C | HN/SAKQGRDRRF | gyrB-a, Signature for DNA topoisomerase II |
| Ter Ndse-1 | 336 | | DOD | S141 | GNVNCIGIRS/C | GQ/CYDEGKRVAE | ndse-a |
| Ter Ndse-2 | 430 | | | N508 | VDIRVARIFN/S | HN/TYGPRMLEND | ndse-b |
| Ter RIR1-1 | 394 | | DOD | R275 | VTIVAGNIRR/C | SN/SAGIRQGSNS | RIR1-d |
| Ter RIR1-2 | 373 | | DOD | P699 | HRLARLGLNP/C | HN/CGEIIGSNFH | RIR1-b |
| Ter RIR1-3 | 323 | | DOD | H982 | CGEIIGSNFH/C | GN/CNLSEIHLNQ | RIR1-f |
| Ter RIR1-4 | 381 | | DOD | G1535 | NRCTTVQPSG/C | HN/TKSLLTNASP | RIR1-g |
| Ter Snf2 | 469 | | DOD | K610 | CLADDMGLGK/C | HN/TIQTIAFLLK | snf2-a, ATP/GTP-binding site motif A (P-loop) |
| Ter ThyX | 298 | | | C11 | QQARTHRIGC/C | HN/SFDVQSYRFC | thyX-a |
| Tfus Hyp-2914 | 341 | | | Y71 | PARGWADIGY/C | GN/SFGACPHGYV | Tfus_2914-a |
| Tfus RecA-1 | 422 | | DOD | K95 | EIYGPESSGK/C | HN/TTVALHAVAN | recA-c, ATP/GTP-binding site motif A (P-loop) |
| Tfus RecA-2 | 357 | | DOD | G649 | LREKVGVMFG/C | HN/SPETTSGGRA | recA-b |
| Tth-HB27 DnaE-1 | 423 | | DOD | R767 | SLGEADLLRR/C | HN/SMGKKKVEEM | dnaE-b |
| Tth-HB27 DnaE-2 | 423 | | DOD | K1238 | EAFANYGFNK/C | HN/SHAAAYSLLS | dnaE-c |
| Tth-HB27 RIR1-1 | 438 | | DOD | G298 | PVLRVVRQGG/C | HN/TRRGAGMATL | RIR1-e |
| Tth-HB27 RIR1-2 | 407 | | DOD | P885 | ERYQIRSTNP/C | HN/CGEIPLTVGE | RIR1-b |
| Tth-HB8 DnaE-1 | 423 | | DOD | R767 | SLGEADLLRR/C | HN/SMGKKKVEEM | dnaE-b |
| Tth-HB8 DnaE-2 | 423 | | DOD | K1238 | EAFANYGFNK/C | HN/SHAAAYSLLS | dnaE-c |
| Tth-HB8 RIR1-1 | 438 | | DOD | G301 | PVLRVVRQGG/C | NH/TRRGAGMATL | RIR1-e |
| Tth-HB8 RIR1-2 | 407 | | DOD | P887 | ERYQIRSTNP/C | HN/CGEIPLTVGE | RIR1-b |
| Tvu DnaE-c | 35 | | None | None | -----DFAEY/C | AN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Tvu DnaE-n | 117 | | None | Y5? | -----DFAEY/C | AN/CFNKSHSTAY | dnaE-a, Beta and tau binding domains |
| Archaea |
| Intein Name |
Intein Size |
Endo Activity |
Endo Motif |
Location in Extein |
N-terminal Splice Junction |
C-terminal Splice Junction |
Insert Site |
| Ape APE0745 | 468 | | | Q175 | LVSQYAITTQ/S | HN/SAFGWGLEHV | APE0745-a |
| Fac-Fer1 RIR1 | 366 | | DOD | P437 | NIGYIESTNP/C | HN/CGEQPLLPYE | RIR1-b |
| Fac-Fer1 SufB (Fac Pps1) | 356 | | DOD | G245 | EGAKVHYIEG/C | HN/CTAPKYNTSS | SufB-b |
| Fac-TypeI RIR1 | 366 | | DOD | P437 | NIGYIESTNP/C | HN/CGEQPLLPYE | RIR1-b |
| Fac-typeI SufB (Fac Pps1) | 356 | | DOD | G242 | EGAKVHYIEG/C | HN/CTAPKYNTSS | SufB-b |
| Hma CDC21 | 477 | | DOD | K331 | LLIGDPGTGK/C | HN/SQMLSYIENI | CDC21-a, ATP/GTP-binding site motif A (P-loop) |
| Hma Pol-II | 180 | | None | N965 | PYFHAAKRRN/C | GQ/CDGDEDCVML | pol_II-a |
| Hma PolB | 409 | | | N630 | QQAAVKVIMN/C | GQ/SLYGVLGWDR | pol-b, Pol Motif B |
| Hma TopA | 537 | | DOD | K492 | TMEDKGLGTK/C | HN/STRHNSIEKL | top-b |
| Hsa-NRC1 CDC21 | 182 | | None | K282 | LLIGDPGTGK/C | HN/SQMISYVQNI | CDC21-a, ATP/GTP-binding site motif A (P-loop) |
| Hsa-NRC1 Pol-II | 195 | | None | N925 | PYFHAAKRRN/C | GQ/CDGDEDCVML | pol_II-a |
| Hvo PolB | 437 | | DOD | D655 | QIGYDVAYGD/S | HN/TDSVMLELGP | pol-c, Pol Motif C |
| Hwa GyrB | 215 | | | G433 | FIVEGDSAGG/C | HN/SAKQGRERRF | gyrB-a, Signature for DNA topoisomerase II |
| Hwa MCM-1 | 209 | | None | K335 | LLIGDPGTGK/C | HN/SAMLQYIRNI | CDC21-a, ATP/GTP-binding site motif A (P-loop) |
| Hwa MCM-2 | 521 | | | L571 | SGKGSSSAGL/C | HN/TAAAVRDDFG | CDC21-b |
| Hwa MCM-3 | 211 | | None | R1131 | AAVDELDKMR/C | HN/SEDRSAMHEA | CDC21-d |
| Hwa MCM-4 | 572 | | | Q1356 | SAMHEALEQQ/S | HN/SISVSKAGIN | CDC21-c |
| Hwa Pol-II-1 | 529 | | DOD? | N966 | PYFHAAKRRN/C | KQ/CDGDEDCVML | pol_II-a |
| Hwa Pol-II-2 | 544 | | DOD | G1524 | REYLPDKRGG/S | HN/SMDAPLVMSS | pol_II-b |
| Hwa PolB-1 | 434 | | DOD | N318 | TDPDILTGWN/C | HN/CDDFDVPYFL | pol-d |
| Hwa PolB-2 | 358 | | | N1030 | QQTAVKVIMN/C | GN/SLYGVLGWDR | pol-b, Pol Motif B |
| Hwa PolB-3 | 431 | | DOD | D1437 | DLDKSVIYGD/S | HN/TDSVMLELGD | pol-c, Pol Motif C |
| Hwa RCF | 323 | | | K61 | LFAGPAGVGK/C | HN/TTAATAIAHA | RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Hwa RIR1-1 | 408 | | DOD | Q201 | TAKEAAEVFQ/C | HN/SGGGMGYAFW | RIR1-k |
| Hwa RIR1-2 | 438 | | DOD | G1036 | HNTTTIAPTG/C | HN/TTSMIGNTTG | RIR1-g |
| Hwa Top6B | 492 | | | Q116 | YGSRFHAREQ/S | KN/SRGQQGIGIS | Top6B-a |
| Hwa rPol A'' | 214 | | None | M87 | QSIGEPGTQM/S | HN/TMNTFHYAGV | rPol A''-a |
| Maeo-N3 Helicase | 524 | | DOD | L372 | IKVICCTPTL/C | HN/SAGLNLPCRR | helicase-a, Motif V of DEAD and DEAH box helicases |
| Maeo-N3 RtcB | 485 | | DOD | N95 | SPGGVGFDINC | HN/CGVRLVKTNL | rtcB-a |
| Maeo-N3 UDP GP | 463 | | DOD | S260 | LNAGIGYGGS/C | HN/CFPKDVRALI | UDP_GD-a |
| Memar MCM2 | 358 | | DOD | Q414 | SALHEAMEQQ/C | GN/SISVAKAGIT | CDC21-c |
| Memar Pol-II | 165 | | None | N870 | PFFHAAKRRN/C | GQ/CDGDEDCVML | pol_II-a |
| Mhu Pol-II | 165 | | None | N872 | PFFHAAKRRN/C | GQ/CDGDEDCVML | pol_II-a |
| Mja GF-6P | 499 | | DOD | H74 | DIDGNIGIGH/C | HN/SRWATHGNVC | GF6P-a |
| Mja Helicase | 501 | | DOD | L337 | IKVICCTPTL/C | HN/SAGLNLPCRR | helicase-a, Motif V of DEAD and DEAH box helicases |
| Mja Hyp-1 | 392 | | DOD | H128 | DVGGLIGPAH/C | HN/CFTPWTSLYK | Mja hyp1-a |
| Mja IF2 | 546 | | DOD | K30 | CVLGHVDHGK/C | HN/TTLLDKIRKT | IF2-a, ATP/GTP-binding site motif A (P-loop) |
| Mja KlbA | 168 | | None | G404 | LVAMNTGHDG/A | SN/CSGTLHANSA | kblA-a |
| Mja PEP | 412 | | DOD | T410 | AIVTDEGGLT/C | FN/CHAAIVSREL | PEPsyn-a, Prosite signature PS00370 |
| Mja Pol-1 | 369 | | DOD | R425 | FEDIISMDFR/C | HN/SLYPSIIISY | pol-a, Pol Motif A |
| Mja Pol-2 | 476 | | DOD | N882 | EQKSLKILAN/S | HN/SVYGYLAFPR | pol-b, Pol Motif B |
| Mja RFC-1 | 548 | | DOD | K53 | LFSGPPGVGK/C | HN/TTAALCLARD | RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Mja RFC-2 | 436 | | DOD | A626 | WRDNFLELNA/S | HN/SDERGIDVIR | RFC-b |
| Mja RFC-3 | 543 | | DOD | S1124 | YSDVCRFILS/C | HN/CNYPSKIIPP | RFC-c |
| Mja RNR-1 | 453 | | DOD | Q337 | NQMYVARGGQ/S | HN/TIFSSINLEL | RNR-a |
| Mja RNR-2 | 533 | | DOD | S1058 | WTVTQTPAES/S | HN/TAGRFARLDY | RNR-b |
| Mja RtcB (Mja Hyp-2) | 488 | | DOD | N97 | SPGGVGFDIN/C | HN/CGVRLIRTNL | rtcB-a |
| Mja TFIIB | 335 | | DOD | Y99 | RCRVGAPMTY/S | HN/TIHDKGLSTV | TFIIB-a |
| Mja UDP GD | 454 | | DOD | S260 | LNAGIGYGGS/C | HN/CFPKDVKALI | UDP_GD-a, Active site |
| Mja r-Gyr | 494 | | DOD | L866 | IAQELFELGL/C | HN/CTYHRTSSTR | top-a, Putative active site Tyr |
| Mja rPol A' | 452 | | DOD | V463 | YRTFRHNLCV/C | GN/CPPYNADFDG | rPol A'-a |
| Mja rPol A'' | 471 | | DOD | M75 | QSIGEPGTQM/S | HN/TMRTFHYAGV | rPol A''-a |
| Mka CDC48 | 394 | | DOD | E634 | PEVLSKWVGE/S | HN/SEKKIREIFQ | CDC48-a |
| Mka EF2 | 522 | | DOD | K35 | GIIAHIDHGK/C | HN/TTLSDQLLAG | IF2-a, ATP/GTP-binding site motif A (P-loop) |
| Mka RFC | 305 | | DOD | A82 | WRDNFLELNA/S | HN/SDERGIDVIR | RFC-b |
| Mka RtcB | 482 | | DOD | N100 | SPGGVGYDIN/C | HN/CGVRVMKTDL | rtcB-a |
| Mka VatB | 517 | | DOD | Y260 | LVILTDMTNY/C | SN/CEALREISAA | vatB-a |
| Mth RIR1 | 134 | | None | P265 | QLGRIEATNP/C | HN/CGEQPLLTHE | RIR1-b |
| Neq Pol-c | 30 | | None | None | EEGFKVIYGD/S | HN/TDSLFISGDK | pol-c, Pol Motif C |
| Neq Pol-n | 98 | | None | D579 | EEGFKVIYGD/S | HN/TDSLFISGDK | pol-c, Pol Motif C |
| Nph CDC21 | 339 | | DOD | K331 | LLIGDPGTGK/C | HN/SQLLQYVKNI | CDC21-a, ATP/GTP-binding site motif A (P-loop) |
| Nph PolB-1 | 401 | | | K518 | KEMVSVLDLK/C | GQ/SLYPMCMVTI | pol-a, Pol Motif A |
| Nph PolB-2 | 409 | | DOD | N1006 | QQSAVKVIMN/C | GQ/SLYGVLGWDR | pol-b, Pol Motif B |
| Nph rPol A'' | 492 | | DOD | M77 | QSIGEPGTQM/S | HN/TMNTFHYAGV | rPol A''-a |
| Pab CDC21-1 | 164 | | None | K334 | LLVGDPGVAK/C | HN/SQLLRYIANL | CDC21-a, ATP/GTP-binding site motif A (P-loop) |
| Pab CDC21-2 | 268 | | | L525 | SGKSSSAAGL/C | HN/TAAVVRDEFT | CDC21-b |
| Pab IF2 | 394 | | DOD | K20 | AVLGHVDHGK/C | HN/TTLLDRIRKT | IF2-a, ATP/GTP-binding site motif A (P-loop) |
| Pab KlbA | 196 | | None | G453 | FTAMNTGHDG/A | SN/CMGTIHSNSA | klbA-a |
| Pab Lon | 333 | | DOD | Q220 | LGDVRHDPFQ/C | KN/SGGLGTPAHL | lon-a |
| Pab Moaa | 455 | | DOD | Y155 | TNRCNLNCWY/C | SN/CFFYAREGEP | Moaa-a |
| Pab Pol-II | 185 | | None | N954 | PYFHAAKRRN/C | HQ/CDGDEDAVML | pol_II-a |
| Pab RFC-1 | 499 | | DOD | K61 | LFAGPPGVGK/C | HN/TTAALALARE | RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Pab RFC-2 | 608 | | DOD | S647 | FSSNVRFILS/C | HN/CNYSSKIIEP | RFC-c |
| Pab RIR1-1 | 399 | | DOD | G301 | VAMIQKMGGG/C | HN/TGLNFSKLRP | RIR1-a |
| Pab RIR1-2 | 438 | PI-PabI | DOD | A722 | DIVGTTTGAA/C | SN/SGPVSFMHLI | RIR1-c |
| Pab RIR1-3 | 382 | PI-PabII | DOD | P1297 | KGGPIRATNP/C | HN/CGEEPLYEYE | RIR1-b |
| Pab RtcB (Pab Hyp-2) | 436 | | DOD | N97 | SPGGIGYDIN/C | HN/CGVRLIRTNL | rtcB-a |
| Pab VMA | 429 | | DOD | K240 | AIPGPFGSGK/C | HN/TVTQHQLAKW | VMA-b, ATP/GTP-binding site motif A (P-loop) |
| Par RIR1 | 392 | | DOD | P439 | FRYVWRSVNP/C | HN/CAETVQNPFE | RIR1-b |
| Pfu CDC21 | 367 | | | L364 | SGKSSSAAGL/C | HN/TAAAVRDEFT | CDC21-b |
| Pfu IF2 | 387 | | DOD | K22 | AVLGHVDHGK/C | HN/TTLLDRIRKT | IF2-a, ATP/GTP-binding site motif A (P-loop) |
| Pfu KlbA | 522 | | DOD | G463 | FTAMNTGHDG/A | SN/CMGTIHANSA | kblA-a |
| Pfu Lon | 401 | | DOD | Q209 | LGDVRHDPFQ/C | KN/SGGLGTPAHE | lon-a |
| Pfu RFC | 525 | | DOD | K59 | LFAGPPGVGK/C | HN/TTAALALARE | RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Pfu RIR1-1 | 454 | PI-PfuI | DOD | G301 | VAMIQKMGGG/C | HN/TGLNFSKLRP | RIR1-a |
| Pfu RIR1-2 | 382 | PI-PfuII | DOD | P914 | KGGPIRATNP/C | HN/CGEEPLYEYE | RIR1-b |
| Pfu RtcB (Pfu Hyp-2) | 380 | | DOD | N97 | SPGGIGYDIN/C | HN/CGVRLIRTNL | rtcB-a |
| Pfu TopA | 373 | | DOD | F314 | IAQSLYEKGF/C | HN/CSYPRTESQK | top-a, 2 aa before the catalytic Y residue |
| Pfu VMA | 425 | | DOD | K240 | AIPGPFGSGK/C | HN/TVTQHQLAKW | VMA-b, ATP/GTP-binding site motif A (P-loop) |
| Pho CDC21-1 | 168 | | None | K334 | LLVGDPGVAK/C | HN/SQLLRYVANL | CDC21-a, ATP/GTP-binding site motif A (P-loop) |
| Pho CDC21-2 | 260 | | Unknown | L529 | SGKSSSAAGL/C | HN/TAAVVRDEFT | CDC21-b |
| Pho IF2 | 444 | | DOD | K22 | AVLGHVDHGK/C | HN/TTLLDKIRKT | IF2-a, ATP/GTP-binding site motif A (P-loop) |
| Pho KlbA | 520 | | DOD | G451 | FTAMNTGHDG/A | SN/CMGTIHSNSA | kblA-a |
| Pho LHR | 475 | | DOD | V346 | LKRGELRAVV/C | KN/SSTSLELGID | LHR-a |
| Pho Lon | 474 | | DOD | Q210 | LGDVRHDPFQ/C | KN/SGGLGTPAHL | lon-a |
| Pho Pol I | 460 | | DOD | N492 | RQRAIKILAN/S | HN/SYYGYYGYAK | pol-b, Pol Motif B |
| Pho Pol-II | 166 | | None | N954 | PYFHAAKRRN/C | HQ/CDGDEDAVML | pol_II-a |
| Pho RFC | 525 | | DOD | K61 | LFAGPPGVGK/C | HN/TTAALALSRE | RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Pho RIR1 | 385 | | DOD | P467 | KGGPIRATNP/C | HN/CGEEPLYEYE | RIR1-b |
| Pho RadA | 172 | | None | K152 | EVFGEFGSGK/C | HN/TQLAHTLAVM | recA-c, ATP/GTP-binding site motif A (P-loop) |
| Pho RtcB (Pho Hyp-2) | 390 | | DOD | N97 | SPGGIGYDIN/C | HN/CGVRLIRTNL | rtcB-a |
| Pho VMA | 376 | | DOD | K240 | AIPGPFGSGK/C | HN/TVTQHGLAKW | VMA-b, ATP/GTP-binding site motif A (P-loop) |
| Pho r-Gyr | 410 | | DOD | L953 | LAQDLFEAGL/C | HN/CTYHRTDSIH | top-a, 2 aa before the catalytic Y residue |
| Psp-GBD Pol | 537 | PI-PspI | DOD | N492 | RQRAIKILAN/S | HN/SYYGYYGYAK | pol-b, Pol Motif B |
| Pto VMA | 333 | | | K236 | AVPGPFGSGK/C | HN/TVIQHQLSKW | VMA-b, ATP/GTP-binding site motif A (P-loop) |
| Smar 1471 | 480 | | | A377 | EAFVLFQAMA/S | HN/TGHGGLSTIH | Smar_1471-a |
| Smar MCM2 | 350 | | | Q429 | SAIHEALEQQ/S | HN/TVSIAKAGIV | CDC21-c |
| Tac-ATCC25905 VMA | 173 | | None | K235 | RVPGPFGSGK/C | HN/TVIQHQLAKW | VMA-b, ATP/GTP-binding site motif A (P-loop) |
| Tac-DSM1728 VMA | 174 | | None | K235 | AVPGPFGSGK/C | HN/TVIQHQLAKW | VMA-b, ATP/GTP-binding site motif A (P-loop) |
| Tag Pol-1 (Tsp-TY Pol-1) | 360 | | DOD | R409 | WENIAYLDFR/C | HN/SLYPSIIVTH | pol-a, Pol Motif A |
| Tag Pol-2 (Tsp-TY Pol-2) | 538 | | DOD | N854 | RQRAVKLLAN/S | HN/SYYGYMGYPK | pol-b, Pol Motif B |
| Tag Pol-3 (Tsp-TY Pol-3) | 157 | | None | D1441 | KFGFKVLYAD/S | HN/TDGFYATIPG | pol-c, Pol Motif C |
| Tfu Pol-1 | 360 | PI-TfuI | DOD | R406 | WENIAYLDFR/C | HN/SLYPSIIISH | pol-a, Pol Motif A |
| Tfu Pol-2 | 389 | PI-TfuII | DOD | D900 | KFGFKVLYAD/S | HN/TDGFFATIPG | pol-c, Pol Motif C |
| Thy Pol-1 | 537 | | DOD | N458 | RQKAIKILAN/S | HN/SYYGYYGYAR | pol-b, Pol Motif B |
| Thy Pol-2 | 389 | PI-ThyI | DOD | D1044 | RFGFKVLYAD/S | HN/TDGFFATIPG | pol-c, Pol Motif C |
| Tko CDC21-1 | 140 | | None | L362 | SGKSSSAAGL/C | HN/TAAAVRDEFT | CDC21-b |
| Tko CDC21-2 | 335 | | | Q553 | SAIHEALEQQ/S | HN/TISISKAGIT | CDC21-c |
| Tko Helicase | 403 | | DOD | L331 | IKVITATPTL/C | HN/SAGINLPAFR | helicase-a, Motif V of DEAD and DEAH box helicases |
| Tko IF2 | 546 | | DOD | K20 | AVLGHVDHGK/C | HN/TTLLDRIRHT | IF2-a, ATP/GTP-binding site motif A (P-loop) |
| Tko KlbA | 523 | | DOD | G511 | FTAMNTGHNG/A | SN/CMGTIHANSA | klbA-a |
| Tko LHR | 525 | | DOD | V345 | LKRGELKAVV/C | KN/SSTSLELGID | LHR-a |
| Tko Pol-1 (Pko Pol-1) | 360 | PI-PkoI | DOD | R406 | WENIVYLDFR/C | HN/SLYPSIIITH | pol-a, Pol Motif A |
| Tko Pol-2 (Pko Pol-2) | 536 | PI-PkoII | DOD | N851 | RQRAIKILAN/S | HN/SYYGYYGYAR | pol-b, Pol Motif B |
| Tko Pol-II | 474 | | DOD | N963 | PYYHAAKRRN/C | HQ/CDGDEDAVML | pol_II-a |
| Tko RFC | 540 | | DOD | K59 | LFAGPPGVGK/C | HN/TTAALALARE | RFC-a, ATP/GTP-binding site motif A (P-loop) |
| Tko RIR1-1 | 454 | | DOD | G301 | VAMIQKAGGG/C | HN/TGLNFSKLRP | RIR1-a |
| Tko RIR1-2 | 382 | | DOD | P914 | KGEKIRATNP/C | HN/CGEEPLYEYE | RIR1-b |
| Tko RadA | 482 | | DOD | K149 | EVFGEFGSGK/C | HN/TQLAHTLAVM | recA-c, ATP/GTP-binding site motif A (P-loop) |
| Tko TopA | 511 | | DOD | Y315 | IAQKLYEKGY/C | HN/CSYPRTSSQK | top-a, 2 aa before the catalytic Y residue |
| Tko r-Gyr | 489 | | DOD | L960 | LAQDLFEAGL/C | HN/CTYHRTDSTH | top-a, 2 aa before the catalytic Y residue |
| Tli Pol-1 | 538 | PI-TliII | DOD | N494 | RQRAIKLLAN/S | HN/SYYGYMGYPK | pol-b, Pol Motif B |
| Tli Pol-2 | 390 | PI-TliI | DOD | D1081 | KRGFKVLYAD/S | HN/TDGFYATIPG | pol-c, Pol Motif C |
| Ton-NA1 Pol | 535 | | DOD | N491 | RQRAIKILAN/S | HN/SYYGYYGYPR | pol-b, Pol Motif B |
| Tpe Pol | 390 | | DOD | D540 | KYGFKVLYAD/S | HN/TDGFFATIPG | pol-c, Pol Motif C |
| Tsp-GE8 Pol-1 | 535 | | DOD | N491 | RQRAIKILAN/S | HN/SYYGYYGYAK | pol-b, Pol Motif B |
| Tsp-GE8 Pol-2 | 389 | | DOD | D1075 | KFGFKVLYAD/S | HN/TDGFFATIPG | pol-c, Pol Motif C |
| Tsp-GT Pol-1 | 537 | | DOD | N491 | RQKAIKILAN/S | HN/SYYGYYGYAR | pol-b, Pol Motif B |
| Tsp-GT Pol-2 | 389 | | DOD | D1077 | RFGFKVLYAD/S | HN/TDGFFATIPG | pol-c, Pol Motif C |
| Tsp-OGL-20P Pol | 537 | | DOD | N491 | RQRAIKILAN/S | HN/SYYGYYGYAR | pol-b, Pol Motif B |
|