Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 RM systems
Ref: Luo,Y. et al. unpublished
REBASE ref # 13075
| Sequence length: | GenBank #: | |
| Chromosome: | 4,817,868 bp | CP002614 |
| plasmid pSTUK-100: | 93,277 bp | CP002615 |
REBASE acronym: SenUK1
Org_num: 7060
All begin STMUK_, STMUK_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4510 | endoribonuclease SymE | |||
| 4511 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenUK1ORF4512P |
| 4512 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenUK1ORF4512P |
| 4513 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenUK1ORF4512P |
| 4514 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1968 | 306 aa hypothetical protein | |||
| 1969 | V | V.StyUK1DcmP (100% identity) | V.SenUK1DcmP | |
| 1970 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenUK1DcmP |
| 1971 | 231 aa hypothetical protein | |||
| 2013 | 129 aa hypothetical protein | |||
| 2014 | M | M.StyUK1V (100% identity) | GATC | M.SenUK1ORF2014P |
| 2015 | 272 aa hypothetical protein | |||
| 3371 | DNA-binding protein Fis | |||
| 3372 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenUK1ORF3372P |
| 3373 | periplasmic protein | |||
| 3469 | ribulose-phosphate 3-epimerase | |||
| 3470 | M | M.StyTDamP (100% identity) | GATC | M.SenUK1DamP |
| 3471 | 425 aa hypothetical protein | |||
| 4480 | ABC-type sugar/spermidine/putrescine | |||
| 4481 | RM | StyUK1IV (100% identity) | GATCAG | SenUK1ORF4481P |
| 4482 | DNA repair ATPase | |||
| plasmid pSTUK-100 | ||||
| 32 | cytoplasmic protein | |||
| 33 | M | M.StyUK1ORFAP (100% identity) | M.SenUK1ORF33P | |
| 34 | cytoplasmic protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 362 | inner membrane protein | |||
| 363 | M | M.StyUK1I (100% identity) | CAGAG | M.SenUK1ORF363P |
| 364 | R | StyUK1IP (99% identity) | CAGAG | SenUK1ORF363P |
| 365 | cytoplasmic protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4513 | type I restriction enzyme EcoKI subunit R | |||
| 4514 | R | StyUK1MrrP (100% identity) | SenUK1MrrP | |
| 4515 | inner membrane protein | |||