Helicobacter pylori 83 |
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Putative Helicobacter pylori 83 RM systems
Ref: Muzny,D. et al. unpublished
REBASE ref # 12323
Complete sequence: 1,617,426 bp
GenBank #: CP002605
REBASE acronym: Hpy83
Org_num: 7059
All begin HMPREF0462_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 497 | polyphosphate kinase 1 | |||
| 498 | S | S.HpyF209ORF467P (99% identity) | S.Hpy83ORF499P | |
| 499 | M | M.Hpy6ORF10270P (87% identity) | M.Hpy83ORF499P | |
| ??? | R | HpyP76ORFQP (95% identity) | Hpy83ORF499P | |
| 502 | 631 aa hypothetical protein | |||
| 557 | PAP2 family protein | |||
| 558 | M | M.HpyF225ORFTP (93% identity) | M.Hpy83ORF558P | |
| ??? | S | S.HpyP89ORFPP (96% identity) | S.Hpy83ORF558P | |
| 561 | R | HpyTN2ORF5590P (85% identity) | Hpy83ORF558P | |
| 562 | hydroxyethylthiazole kinase | |||
| 618 | cadmium-exporting ATPase | |||
| 619 | S | S.HpyUM023ORF5765P (99% identity) | S.Hpy83ORF619P | |
| 620 | outer membrane protein | |||
| 1530 | thymidylate synthase, flavin-dependent | |||
| 1531 | S | S.HpyMKM1ORF1442P (94% identity) | S.Hpy83ORF1533P | |
| 1532 | 258 aa hypothetical protein | |||
| 1533 | M | M.HpyJ013ORF7325P (98% identity) | M.Hpy83ORF1533P | |
| 1534 | R | HpyMKF3ORF1462P (96% identity) | Hpy83ORF1533P | |
| 1535 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 51 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyCOL207ORF6670P (89% identity) | Hpy83ORF52P | |
| 54 | DNA (cytosine-5-)-methyltransferase | |||
| ??? | DNA methyltransferase | |||
| 54 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.Hpy83ORF54P |
| 55 | R | HpyK013VP (100% identity) | GANTC | Hpy83ORF54P |
| 56 | peptidase, S41 family | |||
| 63 | integral membrane protein TerC family | |||
| 64 | M | M1.Hpy192ORFUP (98% identity) | CCTC | M1.Hpy83ORF64P |
| 65 | M | M2.HpyML3ORFMP (78% identity) | CCTC | M2.Hpy83ORF64P |
| 66 | sodium/proline symporter | |||
| 145 | 133 aa hypothetical protein | |||
| 146 | M | M.HpyK046X (96% identity) | GATC | M.Hpy83ORF146P |
| 147 | 146 aa hypothetical protein | |||
| 312 | exodeoxyribonuclease VII, large subunit | |||
| 313 | M | M.HpyJ013X (98% identity) | TCGA | M.Hpy83ORF313P |
| 314 | 84 aa hypothetical protein | |||
| 314 | 84 aa hypothetical protein | |||
| 315 | R | Hpy28ORF294P (97% identity) | CCGG | Hpy83ORF316P |
| 316 | M | M.HpyUM077ORF765P (100% identity) | CCGG | M.Hpy83ORF316P |
| 317 | ATP-dependent chaperone protein ClpB | |||
| 367 | polysaccharide deacetylase | |||
| 368 | R | HpyMKF3ORF368P (99% identity) | CTNAG | Hpy83ORF369P |
| 369 | M | M.HpyMKF3ORF368P (99% identity) | CTNAG | M.Hpy83ORF369P |
| 370 | 125 aa hypothetical protein | |||
| 517 | outer membrane protein | |||
| 518 | M | M.HpyJ013ORF2420P (99% identity) | ATTAAT | M.Hpy83ORF518P |
| 519 | 282 aa hypothetical protein | |||
| 520 | GTP-binding protein TypA | |||
| ??? | M | M.Hpy6ORF10000P (96% identity) | ACNGT | M.Hpy83ORF521P |
| 523 | R | HpyK013ORF2470P (100% identity) | ACNGT | Hpy83ORF521P |
| 524 | 314 aa hypothetical protein | |||
| 725 | cysteine-rich domain protein | |||
| ??? | RM | HpyJ013ORF3435P (99% identity) | Hpy83ORF726P | |
| 728 | 282 aa hypothetical protein | |||
| 747 | 276 aa hypothetical protein | |||
| 748 | M | M.HpyK013ORF3580P (100% identity) | GGNNCC | M.Hpy83ORF748P |
| 749 | R | HpyK013ORF3580P (100% identity) | GGNNCC | Hpy83ORF748P |
| 750 | 133 aa hypothetical protein | |||
| 959 | flagellar hook protein FlgE | |||
| 960 | R | HpyK013ORF4580P (100% identity) | GTNNAC | Hpy83ORF961P |
| 961 | M | M.HpyJ013ORF4535P (98% identity) | GTNNAC | M.Hpy83ORF961P |
| 962 | UvrD/REP helicase | |||
| 1098 | acetyl-CoA carboxylase, biotin carboxylase | |||
| 1099 | M | M.Hpyfe120ORF2030P (100% identity) | TCNNGA | M.Hpy83ORF1099P |
| 1100 | R | Hpy21ORF222P (100% identity) | TCNNGA | Hpy83ORF1099P |
| 1101 | 214 aa hypothetical protein | |||
| 1131 | 156 aa hypothetical protein | |||
| 1132 | M | M.Hpyfe63ORF1855P (99% identity) | GCGC | M.Hpy83ORF1132P |
| 1133 | 67 aa hypothetical protein | |||
| 1219 | haloacid dehalogenase-like hydrolase | |||
| 1220 | M | M.HpyK006I (99% identity) | CATG | M.Hpy83ORF1220P |
| 1221 | R | HpyK013IP (74% identity) | CATG | Hpy83ORF1220P |
| 1222 | 47 aa hypothetical protein | |||
| 1452 | 79 aa hypothetical protein | |||
| 1453 | M | M1.HpyK013VII (100% identity) | GGATG | M1.Hpy83ORF1453P |
| 1454 | M | M1.Hpyfe22ORF285P (100% identity) | GGATG | M2.Hpy83ORF1453P |
| 1455 | R | Hpy55ORF1440P (100% identity) | GGATG | Hpy83ORF1453P |
| 1456 | 191 aa hypothetical protein | |||
| 1481 | permease, YjgP/YjgQ family | |||
| 1482 | M | M2.HpySG04III (100% identity) | CCATC | M2.Hpy83ORF1482P |
| ??? | M | M2.Hpyfe88ORF155P (100% identity) | GATGG | M1.Hpy83ORF1482P |
| ??? | R | Hpy72ORF1404P (99% identity) | CCATC | Hpy83ORF1482P |
| 1487 | outer membrane protein | |||
| 1500 | transcription termination factor NusA | |||
| 1501 | RM | Hpy39ORFNP (91% identity) | Hpy83ORF1501P | |
| 1502 | 152 aa hypothetical protein | |||
| 1552 | 68 aa hypothetical protein | |||
| 1553 | M | M.HpyK050X (99% identity) | TGCA | M1.Hpy83ORF1553P |
| 1554 | R | HpyNCI25IIP (93% identity) | TGCA | Hpy83ORF1553P |
| 1555 | M | M.HpyK013ORF7530P (99% identity) | M2.Hpy83ORF1553P | |
| 1556 | 254 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 36 | rod shape-determining protein MreC | |||
| 37 | R | HpyJ028XIIIP (96% identity) | Hpy83ORF38P | |
| ??? | M | M.HpyF226ORFKP (96% identity) | M.Hpy83ORF38P | |
| 41 | response regulator receiver domain protein | |||
| 1516 | 225 aa hypothetical protein | |||
| 1517 | R | Hpy5ORF70P (97% identity) | Hpy83ORF1518P | |
| ??? | M | M.Hpy5ORF70P (99% identity) | M.Hpy83ORF1518P | |
| 1520 | ATP-dependent DNA helicase RecG | |||