Treponema succinifaciens DSM 2489 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Treponema succinifaciens DSM 2489 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 14333
Complete sequence: 2,731,853 bp
GenBank #: CP002631 (NC_015385)
REBASE acronym: Tsu2489
Org_num: 6883
All begin Tresu_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 192 | Tex-like protein | |||
| 193 | M | M.TreCHPAORF11600P (96% identity) | M.Tsu2489ORF193P | |
| 194 | KilA-N, DNA-binding domain protein | |||
| 195 | protein of unknown function DUF1016 | |||
| 196 | S | S.MspB3ORF5415P (41% identity) | S.Tsu2489ORF193P | |
| 197 | 445 aa hypothetical protein | |||
| 198 | 761 aa hypothetical protein ACD_11C00115G0016 | |||
| 199 | transposase IS3/IS911 family protein | |||
| 200 | filamentation induced by cAMP protein Fic | |||
| 201 | R | TsuC27ORF13455P (98% identity) | Tsu2489ORF193P | |
| 202 | zinc/iron permease | |||
| 364 | filamentation induced by cAMP protein Fic | |||
| ??? | M | type I restriction endonuclease subunit M | M.Tsu2489ORF365P | |
| 366 | R | DEAD/DEAH box helicase | Tsu2489ORF365P | |
| 367 | glycyl-tRNA synthetase | |||
| 512 | 63 aa hypothetical protein | |||
| 513 | M | type I restriction-modification system, M | M.Tsu2489ORF513P | |
| 514 | ATP-binding protein | |||
| 515 | 208 aa hypothetical protein | |||
| ??? | S | S.PmeBin78ORFDP (46% identity) | S.Tsu2489ORF513P | |
| 518 | anticodon nuclease prrc | |||
| 519 | R | Ach8003IIP (72% identity) | Tsu2489ORF513P | |
| 520 | pseudogene | |||
| 582 | XRE family transcriptional regulator | |||
| 583 | R | Csp13003ORF829P (80% identity) | Tsu2489ORF585P | |
| 584 | S | S.PmeBin486ORFAP (32% identity) | S1.Tsu2489ORF585P | |
| 585 | M | M.Csp6137ORF876P (83% identity) | M.Tsu2489ORF585P | |
| 586 | filamentation induced by cAMP protein Fic | |||
| 587 | 64 aa hypothetical protein | |||
| 588 | 194 aa hypothetical protein | |||
| 589 | S | S.Cla2308ORFAP (33% identity) | S2.Tsu2489ORF585P | |
| 590 | 210 aa hypothetical protein | |||
| 1089 | 137 aa hypothetical protein | |||
| 1090 | R | Sal196ORF8610P (40% identity) | Tsu2489ORF1099P | |
| 1091 | 67 aa hypothetical protein | |||
| 1092 | 96 aa hypothetical protein | |||
| 1093 | S | S3.Tsu2489ORF1099P (48% identity) | S1.Tsu2489ORF1099P | |
| 1094 | integrase family protein | |||
| 1095 | S | S.PmeBin587ORFBP (28% identity) | S2.Tsu2489ORF1099P | |
| 1096 | integrase family protein | |||
| 1097 | S | S.Csp356ORF117P (55% identity) | S3.Tsu2489ORF1099P | |
| 1098 | transcriptional regulator | |||
| 1099 | M | N-6 DNA methylase | M.Tsu2489ORF1099P | |
| 1100 | 134 aa hypothetical protein | |||
| 1105 | protein of unknown function DUF1778 | |||
| 1106 | S | S2.Tpu846ORF1025P (59% identity) | S.Tsu2489ORF1106P | |
| 1107 | restriction modification system DNA specificity | |||
| 1106 | restriction modification system DNA specificity | |||
| 1107 | S | S3.Tpu835ORF1055P (26% identity) | S.Tsu2489ORF1107P | |
| 1108 | 156 aa hypothetical protein | |||
| 1112 | protein of unknown function DUF114 | |||
| 1113 | S | S1.TdeOT2BORF210P (48% identity) | S.Tsu2489ORF1114P | |
| 1114 | M | M.Tde853ORF225P (89% identity) | M.Tsu2489ORF1114P | |
| 1115 | R | TspB152ORF210P (80% identity) | Tsu2489ORF1114P | |
| 1116 | sulfatase-modifying factor protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 109 | 516 aa hypothetical protein | |||
| 110 | M | M.TspC2812ORF1945P (68% identity) | M.Tsu2489ORF110P | |
| 111 | transposase IS4 family protein | |||
| 303 | helicase domain protein | |||
| 304 | RM | Tsa32279ORF8200P (49% identity) | Tsu2489ORF304P | |
| 305 | 265 aa hypothetical protein | |||
| 529 | 125 aa hypothetical protein | |||
| 530 | M | M.AspAD10ORF2565P (47% identity) | M.Tsu2489ORF530P | |
| 531 | R | R1.TruRU1ORF1565P (25% identity) | R1.Tsu2489ORF530P | |
| 532 | R | R2.Psp27889ORF345P (9% identity) | R2.Tsu2489ORF530P | |
| 533 | 404 aa hypothetical protein | |||
| 539 | 71 aa hypothetical protein | |||
| 540 | M | M.PmeBin157ORFAP (57% identity) | M.Tsu2489ORF540P | |
| 541 | R | Fsp2445ORF7590P (64% identity) | Tsu2489ORF540P | |
| 542 | C | C.Mvi102ORF48770P (41% identity) | C.Tsu2489ORF540P | |
| 544 | histidine kinase | |||
| 581 | 72 aa hypothetical protein | |||
| 582 | C | C.Tsu2489IVP (80% identity) | C.Tsu2489ORF582P | |
| 583 | Type I site-specific deoxyribonuclease | |||
| 666 | 124 aa hypothetical protein | |||
| 667 | C | C.Tsu2489ORF582P (80% identity) | C.Tsu2489IVP | |
| 668 | M | M3.Tpe3552ORF3110P (85% identity) | GGATG | M1.Tsu2489IV |
| 669 | M | M2.TpeTA4ORF644P (87% identity) | GGATG | M2.Tsu2489IV |
| 670 | R | Tpe3552ORF3110P (95% identity) | GGATG | Tsu2489IVP |
| 671 | M | M1.TpeTA4ORF644P (85% identity) | GGATG | M3.Tsu2489IV |
| 672 | 747 aa hypothetical protein | |||
| 693 | transposase IS116/IS110/IS902 family protein | |||
| 694 | R | Tsa32279ORF24600P (96% identity) | GGWCC | Tsu2489ORF695P |
| 695 | M | M.Tsa32279ORF24600P (92% identity) | GGWCC | M.Tsu2489ORF695P |
| 696 | 222 aa hypothetical protein | |||
| 702 | 248 aa hypothetical protein | |||
| 703 | M | M.Ssp176ORFBP (61% identity) | CCWGG | M.Tsu2489III |
| 704 | R | Cba12CBH8ORF20840P (62% identity) | CCWGG | Tsu2489IIIP |
| 705 | transposase IS116/IS110/IS902 family protein | |||
| 712 | 416 aa hypothetical protein | |||
| 713 | M | M.MspH5ORF3920P (64% identity) | WCCGGW | M.Tsu2489ORF713P |
| 714 | R | Bst2500ORFAP (51% identity) | WCCGGW | Tsu2489ORF713P |
| 715 | transposase IS116/IS110/IS902 family protein | |||
| 928 | pseudogene | |||
| 929 | RM | helicase | Tsu2489ORF929P | |
| 930 | helix-turn-helix domain protein | |||
| 1678 | 138 aa hypothetical protein | |||
| 1679 | R | PspRep29ORF1475P (47% identity) | GGCC | Tsu2489ORF1682P |
| 1680 | 168 aa hypothetical protein | |||
| 1681 | 80 aa hypothetical protein | |||
| 1682 | M | DNA (cytosine-5-)-methyltransferase | GGCC | M.Tsu2489ORF1682P |
| 1683 | 236 aa hypothetical protein | |||
| 1685 | Methyltransferase type 11 | |||
| 1686 | R | Tsp45I type II restriction protein | GTSAC | Tsu2489IIP |
| 1687 | M | M.TphV1ORF30070P (61% identity) | GTSAC | M.Tsu2489II |
| 1688 | histidine kinase | |||
| 1690 | YD repeat-containing protein | |||
| 1691 | M | M1.Tsp4132ORF6400P (79% identity) | GATC | M1.Tsu2489ORF1691P |
| 1692 | M | M2.Mbo237TORF6077P (18% identity) | GATC | M2.Tsu2489ORF1691P |
| 1693 | 156 aa hypothetical protein | |||
| 1694 | R | Tsa32279ORF980P (84% identity) | GATC | Tsu2489ORF1691P |
| 1695 | 179 aa hypothetical protein | |||
| 1696 | M | M2.TruRU1ORF5445P (71% identity) | GATC | M3.Tsu2489ORF1691P |
| 1697 | 91 aa hypothetical protein | |||
| 1986 | 358 aa hypothetical protein | |||
| 1987 | M | M.Cmi15897aORF6235P (71% identity) | GGNNCC | M.Tsu2489ORF1987P |
| 1988 | R | Nsu69ORF325P (70% identity) | GGNNCC | Tsu2489ORF1987P |
| 1989 | transcriptional regulator, LysR family | |||
| 2144 | 84 aa hypothetical protein | |||
| 2145 | M | M.TruRU1ORF10865P (69% identity) | TTTAAA | M.Tsu2489V |
| 2146 | Protein of unknown function DUF2130 | |||
| 2157 | 284 aa hypothetical protein | |||
| 2158 | M | M.TsuC27ORF2710P (99% identity) | RAATTY | M.Tsu2489I |
| 2159 | MATE efflux family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 644 | transcriptional regulator, XRE family | |||
| 645 | M | M.PmeBin199ORFAP (28% identity) | M.Tsu2489ORF645P | |
| 646 | R | Hsp6451ORF10445P (36% identity) | Tsu2489ORF645P | |
| 647 | transposase IS116/IS110/IS902 family protein | |||
| 1192 | Protein of unknown function DUF2081 | |||
| 1193 | R | TspC2812ORF10370P (96% identity) | Tsu2489ORF1195P | |
| 1194 | 350 aa hypothetical protein | |||
| 1195 | M | M.TspC2812ORF10370P (95% identity) | M.Tsu2489ORF1195P | |
| 1196 | 596 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1670 | 37 aa hypothetical protein | |||
| 1671 | R | DNA repair helicase | Tsu2489ORF1671P | |
| 1672 | NUDIX hydrolase | |||