Desulfobacca acetoxidans DSM 11109 |
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Putative Desulfobacca acetoxidans DSM 11109 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 14336
Complete sequence: 3,282,536 bp
GenBank #: CP002629 (NC_015388)
REBASE acronym: Dac11109
Org_num: 6881
All begin Desac_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 73 | redox-active disulfide protein 2 | |||
| 74 | R | Protein of unknown function DUF318, | CCCNNNNNRTTC | Dac11109IVP |
| 75 | M | M2.Msp273VII (47% identity) | CCCNNNNNRTTC | M2.Dac11109IV |
| 76 | Protein of unknown function DUF2081 | |||
| 77 | M | M1.Msp273ORF2085P (79% identity) | CCCNNNNNRTTC | M1.Dac11109IV |
| 78 | 105 aa hypothetical protein | |||
| 907 | 188 aa hypothetical protein | |||
| 908 | S | S.Mch9957III (28% identity) | S.Dac11109ORF910P | |
| 909 | filamentation induced by cAMP protein Fic | |||
| 910 | M | M.Tth5018ORF14610P (71% identity) | M.Dac11109ORF910P | |
| 911 | 411 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 390 | O-methyltransferase family 3 | |||
| ??? | M | M.DspN47ORF20180P (60% identity) | RGATCY | M.Dac11109ORFAP |
| 392 | ABC transporter substrate-binding protein | |||
| 558 | DNA polymerase beta domain protein region | |||
| 559 | M | M.SmaMSU97ORF21030P (56% identity) | CCCGGG | M.Dac11109ORF559P |
| 560 | riboflavin biosynthesis protein RibD | |||
| 609 | Protein of unknown function DUF2335, membrane | |||
| 610 | M | M.Mta1123ORF1602P (59% identity) | GTAC | M.Dac11109II |
| 611 | DNA polymerase beta domain protein region | |||
| 698 | RNA-binding protein | |||
| 699 | RM | Pga1313ORF8960P (20% identity) | Dac11109ORF696P | |
| 700 | 339 aa hypothetical protein | |||
| 753 | SsrA-binding protein | |||
| 754 | RM | Dac11109ORF1226P (33% identity) | Dac11109ORF754P | |
| 755 | protein of unknown function UPF0153 | |||
| 972 | Asparaginyl-tRNA synthetase | |||
| 973 | RM | Dco806ORF26580P (57% identity) | Dac11109ORF973P | |
| 974 | 369 aa hypothetical protein | |||
| 1225 | prevent-host-death family protein | |||
| 1226 | RM | Dac11109ORF754P (33% identity) | Dac11109ORF1226P | |
| 1227 | 61 aa hypothetical protein | |||
| 1275 | pseudogene | |||
| 1276 | M | 167 aa hypothetical protein | TCTAGA | M.Dac11109ORF1276P |
| 1277 | Serine--glyoxylate transaminase | |||
| 1827 | PAS/PAC sensor hybrid histidine kinase | |||
| 1828 | M | M.DauMPORF708P (52% identity) | TCTAGA | M.Dac11109ORF1828P |
| 1829 | 2-oxoglutarate synthase | |||
| 2400 | Methylmalonyl-CoA decarboxylase | |||
| 2401 | M | M.MspLAm1ORF4650P (64% identity) | CTAG | M.Dac11109III |
| 2402 | 72 aa hypothetical protein | |||
| 2469 | metal-dependent phosphohydrolase HD sub domain | |||
| 2470 | M | M.Dac11109ORF2963P (76% identity) | CGCG | M.Dac11109ORF2470P |
| 2471 | Antibiotic biosynthesis monooxygenase | |||
| 2852 | GTP-binding protein lepA | |||
| 2853 | M | M.MoxORF3047P (77% identity) | M.Dac11109ORF2853P | |
| 2854 | aspartyl-tRNA synthetase | |||
| 2962 | pseudogene | |||
| 2963 | M | M.Dac11109ORF2470P (76% identity) | CGCG | M.Dac11109ORF2963P |
| 2964 | pseudogene | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2432 | two component, sigma54 specific, transcriptional | |||
| 2433 | M | M.TelBORF1481P (50% identity) | GACGA | M.Dac11109I |
| 2434 | 246 aa hypothetical protein | |||
| 2435 | R | TelBORF1481P (69% identity) | GACGA | Dac11109IP |
| 2436 | 115 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 879 | 100 aa hypothetical protein | |||
| 880 | R | PbaMalM14McrBP (43% identity) | Dac11109McrBP | |
| 881 | R | DauMPMcrCP (42% identity) | Dac11109McrCP | |
| 882 | DNA binding domain protein, excisionase family | |||