Ruminococcus flavefaciens FD-1 |
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Putative Ruminococcus flavefaciens FD-1 RM systems
Ref: Berg Miller,M.E. et al. PLoS ONE 4 (8), E6650 (2009)
REBASE ref # 12452
Contig set: 4,573,608 bp
GenBank #: ACOK00000000 (NZ_ACOK00000000)
REBASE acronym: RflF
Org_num: 2209
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.PsuFMUORF2305P (85% identity) | M.RflFORFJP | |
| ??? | S | S1.EhaX29ORF2445P (35% identity) | S1.RflFORFJP | |
| ??? | S | S.RflFORFABP (100% identity) | S2.RflFORFJP | |
| ??? | R | PmeBin113ORFDP (76% identity) | RflFORFKP | |
| ??? | S | S.PmeBin113ORFDP (74% identity) | S.RflFORFKP | |
| ??? | M | M.Ssp512ORF15410P (67% identity) | M.RflFORFKP | |
| ??? | R | RspA76ORFGP (97% identity) | RflFORFLP | |
| ??? | S | S.Lru1ORF4960P (24% identity) | S.RflFORFLP | |
| ??? | M | M.RspA76ORFGP (98% identity) | M.RflFORFLP | |
| ??? | R | CspSO14ORF3669P (84% identity) | RflFORFOP | |
| ??? | S | S.RflFORFCP (51% identity) | S.RflFORFOP | |
| ??? | R | CbaF4ORF10310P (75% identity) | RflFORFRP | |
| ??? | S | S.RflFORFAAP (100% identity) | S.RflFORFRP | |
| ??? | M | M.EspCORF216P (69% identity) | M.RflFORFXP | |
| ??? | S | S.Sin13760I (51% identity) | S1.RflFORFXP | |
| ??? | R | RlaORF744P (47% identity) | RflFORFXP | |
| ??? | type I restriction modification DNA specificity domain protein | |||
| ??? | S | S1.Sma5683ORF6410P (57% identity) | S2.RflFORFXP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | M.Rfl3010ORFEP (45% identity) | RflFORFEP | |
| ??? | R | Rsp18ORF11950P (94% identity) | GGNCC | RflFORFDP |
| ??? | M | M.Rsp18ORF11950P (99% identity) | GGNCC | M.RflFORFDP |
| ??? | M | M.PmeBin500ORFGP (58% identity) | GTCGAC | M.RflFORFFP |
| ??? | R | PmeBin52ORFAP (76% identity) | GTCGAC | RflFORFFP |
| ??? | RM | helicase, putative | RflFORFGP | |
| ??? | M | M1.PmeBin599ORFAP (31% identity) | GAATTC | M.RflFORFHP |
| ??? | RM | RflFORFGP (15% identity) | RflFORFIP | |
| ??? | C | C.EspMGS26ORFDP (80% identity) | C.RflFORFMP | |
| ??? | M | M.PmeBin456ORFCP (77% identity) | AGCT | M.RflFORFMP |
| ??? | RM | restriction enzyme | RflFORFNP | |
| ??? | M | M.Rfl3010ORFHP (96% identity) | M.RflFORFPP | |
| ??? | RM | Ral7ORF3270P (71% identity) | CGCCAG | RflFIII |
| ??? | C | C.Pst19aORF293P (68% identity) | C.RflFORFSP | |
| ??? | R | BsuJRS9ORF1439P (54% identity) | RflFORFSP | |
| ??? | M | M.BsuPRO93ORF21515P (13% identity) | AGGCCT | M1.RflFORFSP |
| ??? | M | M.BsuJRS9ORF1439P (32% identity) | AGGCCT | M2.RflFORFSP |
| ??? | M | M.Ral7ORF1386P (86% identity) | M.RflFORFTP | |
| ??? | M | 280 aa hypothetical protein RflaF_20289 | M.RflFORFWP | |
| ??? | M | M.PmeBin150ORFCP (99% identity) | CCTTC | M.RflFORFYP |
| ??? | R | PmeBin150ORFCP (99% identity) | CCTTC | RflFORFYP |
| ??? | M | M.RspMGS30ORFLP (85% identity) | GATC | M.RflFORFZP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Pmi29III (58% identity) | M.RflFORFVP | |
| ??? | R | Eca2594ORF12510P (71% identity) | RflFORFVP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | SwoGMrrP (12% identity) | RflFMrrP | |
| ??? | R | RspA76McrCP (91% identity) | RflFMcrCP | |
| ??? | R | RspA76McrBP (67% identity) | RflFMcrBP | |
| ??? | R | GspM21MrrP (14% identity) | RflFMrr2P | |