Helicobacter pylori 2017 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori 2017 RM systems
Ref: Avasthi,T.S. et al. unpublished
REBASE ref # 12924
Complete sequence: 1,548,238 bp
GenBank #: CP002571
REBASE acronym: Hpy2017
Org_num: 6818
All begin hp2017_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 441 | Polyphosphate kinase | |||
| 442 | S | S.Hpy908ORF455P (100% identity) | S.Hpy2017ORF443P | |
| 443 | M | M.Hpy908ORF455P (100% identity) | M.Hpy2017ORF443P | |
| ??? | R | Hpy908ORF455P (99% identity) | Hpy2017ORF443P | |
| 446 | conserved domain protein | |||
| 827 | Hydroxyethylthiazole kinase | |||
| 8281 | R | Hpy908ORF863P (100% identity) | Hpy2017ORF830P | |
| ??? | S | typeI restriction-modification system subunit S | S.Hpy2017ORF830P | |
| 830 | M | M.Hpy908ORF863P (82% identity) | M.Hpy2017ORF830P | |
| 831 | 227 aa hypothetical protein | |||
| 1462 | Thymidylate synthase | |||
| 1463 | S | S.Hpy908ORF1522P (100% identity) | S.Hpy2017ORF1464P | |
| ??? | M | M.Hpy908ORF1522P (100% identity) | M.Hpy2017ORF1464P | |
| 1465 | R | Hpy908ORF1522P (100% identity) | Hpy2017ORF1464P | |
| 1466 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 51 | 330 aa hypothetical protein | |||
| 52 | M | M1.Hpy908ORF54P (100% identity) | CCTC | M1.Hpy2017ORF52P |
| 53 | M | M2.Hpy908ORF54P (100% identity) | CCTC | M2.Hpy2017ORF52P |
| 54 | 419 aa hypothetical protein | |||
| 53 | type II DNA modification enzyme | |||
| 54 | R | Hpy908ORF57P (100% identity) | CCTTC | Hpy2017ORF55P |
| 55 | M | M.Hpy908ORF57P (99% identity) | CCTTC | M.Hpy2017ORF55P |
| 56 | Proline/sodium symporter/Propionate/sodium | |||
| 97 | HrgA like protein | |||
| 98 | M | M.Hpy908ORF102P (100% identity) | GATC | M.Hpy2017ORF98P |
| 991 | alpha 1,2 fucosyltransferase | |||
| 265 | Exodeoxyribonuclease VII large subunit | |||
| 266 | M | M.Hpy908ORF272P (99% identity) | TCGA | M.Hpy2017ORF266P |
| 267 | 29 aa hypothetical protein | |||
| 267 | 29 aa hypothetical protein | |||
| ??? | R | Hpy908ORF277P (100% identity) | CCGG | Hpy2017ORF270P |
| 270 | M | M.HpyG004II (100% identity) | CCGG | M.Hpy2017ORF270P |
| 271 | ClpB protein | |||
| 458 | Glutamyl-tRNA synthetase | |||
| ??? | M | M.Hpy908ORF471P (100% identity) | ATTAAT | M.Hpy2017ORF459P |
| 4593 | adenine specific DNA methyltransferase | |||
| 460 | GTP-binding protein | |||
| 461 | M | M.Hpy908ORF475P (100% identity) | ACNGT | M.Hpy2017ORF461P |
| ??? | R | Hpy908ORF475P (100% identity) | ACNGT | Hpy2017ORF461P |
| 4631 | Type II DNA modification enzyme | |||
| ??? | 207 aa hypothetical protein | |||
| ??? | M | M.Hpy908ORF478P (95% identity) | ACGT | M.Hpy2017ORF4631P |
| ??? | R | Hpy908ORF478P (100% identity) | ACGT | Hpy2017ORF4631P |
| 465 | Catalase like protein | |||
| 480 | DNA gyrase subunit B | |||
| 481 | M | M.Hpy908ORF500P (100% identity) | GTAC | M.Hpy2017ORF481P |
| 482 | R | Hpy908ORF500P (100% identity) | GTAC | Hpy2017ORF481P |
| 483 | metalloendopeptidase like protein | |||
| 656 | Glycerol 3-phosphate dehydrogenase | |||
| ??? | RM | Hpy2018ORF6581P (100% identity) | Hpy2017ORF6571P | |
| 658 | 828 aa hypothetical protein | |||
| 673 | 270 aa hypothetical protein | |||
| 674 | M | type II DNA modification enzyme/ methyl | CCNNGG | M.Hpy2017ORF674P |
| 675 | 37 aa hypothetical protein | |||
| 676 | R | Hpy908ORF696P (100% identity) | CCNNGG | Hpy2017ORF674P |
| 677 | Acetone carboxylase gamma subunit | |||
| 891 | Flagellar hook protein | |||
| 892 | R | Hpy908ORF923P (100% identity) | GTNNAC | Hpy2017ORF893P |
| 893 | M | M.Hpy2018ORF894P (100% identity) | GTNNAC | M.Hpy2017ORF893P |
| 894 | ATP-dependent DNA helicase | |||
| 1037 | Biotin carboxylase | |||
| 1038 | M | M.HpyPO06XI (100% identity) | TCNNGA | M.Hpy2017ORF1038P |
| 1039 | R | HpyK262ORF6170P (100% identity) | TCNNGA | Hpy2017ORF1038P |
| 1040 | 201 aa hypothetical protein | |||
| 1073 | 144 aa hypothetical protein | |||
| 1074 | M | M.Hpy908ORF1117P (100% identity) | GCGC | M.Hpy2017ORF1074P |
| 1075 | FlgM like protein | |||
| 1164 | haloacid dehalogenase/epoxide hydrolase | |||
| 1165 | M | M.Hpy908ORF1210P (100% identity) | CATG | M.Hpy2017ORF1165P |
| 1166 | O-Serine acetyltransferase | |||
| 1310 | Carboxy terminal protease | |||
| 1311 | R | Hpy908ORF1355P (100% identity) | GANTC | Hpy2017ORF1312P |
| 1312 | M | M.Hpy908ORF1355P (100% identity) | GANTC | M.Hpy2017ORF1312P |
| 1313 | adenine specific DNA methyltransferase | |||
| 1312 | adenine specific DNA methyltransferase | |||
| ??? | RM | Hpy300XI (84% identity) | Hpy2017ORF1315P | |
| 1316 | Nicotinate nucleotide phosphorylase | |||
| 1324 | YjeF family protein | |||
| 1325 | R | type IIS restriction enzyme R protein | GAAGA | Hpy2017ORF1326P |
| 1326 | M | M1.Hpy2018ORF1330P (100% identity) | GAAGA | M1.Hpy2017ORF1326P |
| 1327 | M | M2.Hpy2018ORF1330P (100% identity) | GAAGA | M2.Hpy2017ORF1326P |
| 1328 | Type III restriction-modification system | |||
| 1353 | lipopolysaccharide biosynthesis protein | |||
| 1354 | M | M.HpyU420VI (100% identity) | GAATTC | M.Hpy2017ORF1354P |
| 1355 | R | HpyU420VIP (100% identity) | GAATTC | Hpy2017ORF1354P |
| 1356 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1404 | DNA polymerase I | |||
| ??? | S | S.Hpy2018ORF14081P (100% identity) | S.Hpy2017ORF14062P | |
| ??? | RM | Hpy2018ORF14081P (100% identity) | Hpy2017ORF14062P | |
| 1407 | 185 aa hypothetical protein | |||
| 1484 | 67 aa hypothetical protein | |||
| 1485 | M | M.HpyU105XI (100% identity) | TGCA | M.Hpy2017ORF1485P |
| 1486 | R | Hpy908ORF1546P (100% identity) | TGCA | Hpy2017ORF1485P |
| 1487 | Translation elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1327 | type IIS restriction enzyme M2 protein | |||
| 1328 | M | M1.Hpy2018ORF1332P (100% identity) | M1.Hpy2017ORF1328P | |
| ??? | M | M.Hpy908ORF1370P (100% identity) | M2.Hpy2017ORF1328P | |
| 1330 | R | Hpy908ORF1370P (100% identity) | Hpy2017ORF1328P | |
| 1331 | Rod shape-determining protein | |||
| 1341 | endonuclease | |||
| 1342 | M | M.Hpy908ORF1383P (100% identity) | M.Hpy2017ORF1342P | |
| ??? | R | Hpy2018ORF1346P (99% identity) | Hpy2017ORF1342P | |
| 1344 | Biotin synthase | |||
| 1450 | pseudogene | |||
| 1451 | M | M.Hpy908ORF1507P (67% identity) | M.Hpy2017ORF1451P | |
| 1452 | ATP-dependent DNA helicase | |||