Ref: Budroni,S. et al. Proc. Natl. Acad. Sci. U.S.A. (2011) In press

REBASE ref # 12558

Complete sequence: 2,250,449 bp

GenBank #: CP002423

REBASE acronym: Nme0196

Org_num: 5404

 

All begin NMBM04240196_

Type I
ORF Gene Most similar Specificity Name
 
1334 ATP-dependent Clp protease ATP-binding subunit
1335 R Nme18727ORFLP (100% identity) Nme0196ORF1337P
??? S S.NmeA710ORF931P (100% identity) S.Nme0196ORF1337P
1337 M M.Nme355ORF821P (100% identity) M.Nme0196ORF1337P
1338 ADP-glyceromanno-heptose 6-epimerase
Type II
ORF Gene Most similar Specificity Name
 
72 hypothetical protein
73 M M1.NmeMC58ORF76P (100% identity) GGTGA M.Nme0196ORF73P
74 S1 RNA binding domain protein
 
624 transposase
625 M M.NmeA710ORF1828P (81% identity) GCGCGC M.Nme0196ORF625P
626 R 340 aa conserved hypothetical protein GCGCGC Nme0196ORF625P
627 alanyl-tRNA synthetase
 
910 ribonucleoside-diphosphate reductase, alpha
911 M modification methylase EcoRII CCWGG M.Nme0196ORF911P
912 R type II restriction enzyme CCWGG Nme0196ORF911P
913 ribonucleoside-diphosphate reductase, beta
 
1126 3-isopropylmalate dehydratase, small subunit
1127 M M.NmeH44ORF1488P (100% identity) GGNNCC M.Nme0196ORF1127P
1128 R pseudogene GGNNCC Nme0196ORF1127P
1129 3-isopropylmalate dehydrogenase
 
1338 ADP-glyceromanno-heptose 6-epimerase
??? R Nme385ORF1306P (100% identity) CCAGA Nme0196ORF1340P
1340 M M.NmeMC58III (100% identity) CCAGA M.Nme0196ORF1340P
1341 hldE bifunctional protein, domain I
 
1437 phenylalanyl-tRNA synthetase, beta subunit
1438 M M2.NmeMC58II (100% identity) GACGC M1.Nme0196ORF1438P
1439 R NmeMC58IIP (100% identity) GACGC Nme0196ORF1438P
1440 M M1.NmeMC58IIP (100% identity) GACGC M2.Nme0196ORF1438P
1441 phenylalanyl-tRNA synthetase, alpha subunit
 
1830 conserved domain protein
1831 R NmeBS847ORFAP (100% identity) GATC Nme0196ORF1831P
1832 leucyl-tRNA synthetase
Type III
ORF Gene Most similar Specificity Name
 
829 L-lactate dehydrogenase
830 R Nme522ORF870P (100% identity) Nme0196ORF831P
831 M M.Nme20492ORFAP (80% identity) M.Nme0196ORF831P
832 tRNA pseudouridine synthase B
 
939 pseudogene
940 R NmeMC58ORF1261P (100% identity) Nme0196ORF940P
941 transposase IS4 family
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