Escherichia coli isolate NCTC86EC |
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Putative Escherichia coli isolate NCTC86EC RM systems
Ref: Johnson,T.J. and Isaacson,R.E. unpublished
REBASE ref # 12619
| Sequence length: | GenBank #: | |
| Chromosome: | 4,517,924 bp | FBSE00000000 (NZ_FBSE00000000) |
| chromosome I: | 5,144,250 bp | LT601384 |
| chromosome RL465_chromosome: | 4,894,900 bp | LT594504 |
| plasmid pPWD4_103: | 103,297 bp | HQ114284 |
REBASE acronym: EcoPWD4
Org_num: 13158
All begin JF733_, NCTC86EC_, PWD4IncI1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4211 | endoribonuclease SymE | |||
| 4212 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoJF733ORF4213P |
| 4213 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoJF733ORF4213P |
| ??? | R | Msa17ORFC2P (100% identity) | AACNNNNNNGTGC | EcoJF733ORF4213P |
| 4215 | EcoKMrr | |||
| chromosome I | ||||
| 2109 | 81 aa hypothetical protein | |||
| 2110 | M | M.EcosB2CORFEP (100% identity) | M.Eco86ECORF2110P | |
| 2111 | type I restriction-modification enzyme, S | |||
| 2112 | S | S.EcosB2CORFEP (86% identity) | S.Eco86ECORF2110P | |
| 2113 | 218 aa hypothetical protein | |||
| 2114 | RNase III inhibitor | |||
| 2115 | R | PmeBin330ORFCP (100% identity) | Eco86ECORF2110P | |
| 2116 | SprT-like family protein | |||
| 2138 | transposase subunit | |||
| ??? | S | S2.EcoSTEC416ORF10780P (62% identity) | S.Eco86ECORFAP | |
| 2140 | 217 aa hypothetical protein | |||
| 2143 | 83 aa hypothetical protein | |||
| ??? | R | PmeBin330ORFCP (94% identity) | Eco86ECORF2144P | |
| ??? | S | S2.EcoMEC0001ORF18360P (95% identity) | S.Eco86ECORF2144P | |
| 2152 | IS66 family orf1 | |||
| chromosome RL465_chromosome | ||||
| ??? | M | M.SenS688ORF13495P (100% identity) | M.EcoRL465ORFCP | |
| ??? | S | S.Sen12509ORF5865P (100% identity) | S.EcoRL465ORFCP | |
| ??? | R | Sen12509ORF5865P (100% identity) | EcoRL465ORFCP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3257 | Ribulose-phosphate 3-epimerase | |||
| 3258 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoJF733DamP |
| 3259 | cell division protein DamX | |||
| 3135 | Hin recombinational enhancer-binding protein | |||
| 3136 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoJF733ORF3136P |
| 3137 | 59 aa hypothetical protein | |||
| 1870 | Very short patch repair protein | |||
| 1871 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoJF733DcmP |
| 1872 | hydrolase | |||
| chromosome I | ||||
| 888 | metal dependent phosphohydrolase | |||
| 889 | M | M.SflN116DcmP (100% identity) | CCWGG | M.Eco86ECDcmP |
| ??? | V | V.EcoO146DcmP (100% identity) | V.Eco86ECDcmP | |
| 891 | carboxylate/amino acid/amine transporter | |||
| 1609 | pseudogene | |||
| 1612 | M | M.Spn7978ORF3515P (100% identity) | A | M.Eco86ECORF1612P |
| 1613 | lipoprotein | |||
| 2924 | 568 aa hypothetical protein | |||
| 2925 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.Eco86ECORF2925P |
| 2926 | site-specific recombinase, phage integrase | |||
| 3759 | DNA-binding protein Fis | |||
| 3760 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco86ECORF3760P |
| 3761 | membrane protein | |||
| 3889 | ribulose-phosphate 3-epimerase | |||
| 3890 | M | M.SsoST152DamP (100% identity) | GATC | M.Eco86ECDamP |
| 3891 | sporulation domain-containing protein | |||
| 4934 | histidine kinase-like protein | |||
| 4935 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.Eco86ECORF4935P |
| 4936 | transposase | |||
| chromosome RL465_chromosome | ||||
| ??? | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoRL465ORFHP |
| ??? | M | M.Sso90ORF15820P (99% identity) | GATC | M.EcoRL465ORFFP |
| ??? | DNA adenine methylase | |||
| ??? | phage N-6-adenine-methyltransferase | |||
| ??? | M | M.Sen38ORF10355P (100% identity) | M.EcoRL465ORFGP | |
| ??? | V | V.Sdy49550DcmP (100% identity) | V.EcoRL465DcmP | |
| ??? | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoRL465DcmP |
| ??? | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoRL465ORFBP |
| plasmid pPWD4_103 | ||||
| 31 | 101 aa hypothetical protein | |||
| 32 | M | M.Sfl712783ORFFP (100% identity) | M.EcoPWD4ORF32P | |
| 33 | 144 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 5012 | type III restriction enzyme, res subunit | |||
| 5013 | M | M.Ecos19ORF20250P (100% identity) | GAGCC | M.Eco86ECORF5013P |
| 5014 | R | Ecos19ORF20250P (100% identity) | GAGCC | Eco86ECORF5013P |
| 5015 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4208 | 906 aa hypothetical protein | |||
| 4209 | R | SenHNK130McrCP (100% identity) | EcoJF733McrCP | |
| 4210 | R | Msa17McrB2P (100% identity) | EcoJF733McrBP | |
| 4211 | endoribonuclease SymE | |||
| ??? | type I restriction-modification system deoxyribonuclease | |||
| 4215 | R | SenHNK130MrrP (100% identity) | EcoJF733MrrP | |
| 4216 | GTP-binding protein YjiA | |||
| ??? | Mrr restriction system protein | |||
| 4215 | R | SenHNK130MrrP (100% identity) | EcoJF733Mrr2P | |
| 4216 | GTP-binding protein YjiA | |||
| chromosome RL465_chromosome | ||||
| ??? | R | Ecos2020McrBP (100% identity) | EcoRL465McrB2P | |
| ??? | R | EmaE2C08McrCP (100% identity) | EcoRL465McrC2P | |
| ??? | R | EcoteDMcrBP (92% identity) | EcoRL465McrBP | |
| ??? | R | EmaE2C08McrCP (100% identity) | EcoRL465McrCP | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome RL465_chromosome | ||||
| ??? | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoRL465ORFEP |
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRL465ORFAP |