Salmonella enterica subsp. enterica serovar Typhimurium SL1344 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium SL1344 RM systems
Ref: Dougan,G. et al. unpublished
REBASE ref # 12474
Complete sequence: 4,878,012 bp
GenBank #: FQ312003
REBASE acronym: SenSL
Org_num: 6708
All begin SL1344_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4454 | endoribonuclease | |||
| 4455 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSLORF4456P |
| 4456 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSLORF4456P |
| 4457 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSLORF4456P |
| 4458 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1918 | 306 aa hypothetical membrane protein | |||
| 1919 | V | V.StyUK1DcmP (100% identity) | V.SenSLDcmP | |
| 1920 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSLDcmP |
| 1921 | 231 aa conserved hypothetical protein | |||
| 1961 | predicted bacteriophage protein | |||
| 1962 | M | M.StyUK1V (100% identity) | GATC | M.SenSLORF1962P |
| 1963 | predicted bacteriophage protein | |||
| 2587 | predicted bacteriophage protein | |||
| 2588 | M | M.Sens29958ORF6205P (100% identity) | M.SenSLORF2588P | |
| 2589 | predicted bacteriophage protein | |||
| 2701 | predicted bacteriophage protein | |||
| 2702 | M | M.StySopEDamP (100% identity) | GATC | M.SenSLORF2702P |
| 2703 | 75 aa hypothetical bacteriophage protein | |||
| 3358 | Fis DNA-binding protein | |||
| 3359 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSLORF3359P |
| 3360 | 54 aa hypothetical exported protein | |||
| 3450 | ribulose-phosphate 3-epimerase | |||
| 3451 | M | M.StyTDamP (100% identity) | GATC | M.SenSLDam |
| 3452 | cytoplasmic membrane protein with SPOR domain | |||
| 4423 | 363 aa hypothetical ABC-type | |||
| 4424 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSLORF4424P |
| 4425 | 1213 aa hypothetical ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 351 | 417 aa hypothetical metabolite transport protein | |||
| 352 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSLORF352P |
| 353 | R | StyUK1IP (100% identity) | CAGAG | SenSLORF352P |
| 354 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4457 | type III restriction enzyme | |||
| 4458 | R | StyUK1MrrP (100% identity) | SenSLMrrP | |
| 4459 | 95 aa hypothetical protein | |||