Unidentified butyrate-producing bacterium SM4/1 |
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Putative Unidentified butyrate-producing bacterium SM4/1 RM systems
Ref: Pajon,A. et al. unpublished
REBASE ref # 12145
Complete sequence: 3,108,859 bp
GenBank #: FP929060
REBASE acronym: UbaSM4
Org_num: 6705
All begin CL3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16790 | 45 aa hypothetical protein | |||
| ??? | S | S.Cse1583ORF16490P (90% identity) | S.UbaSM4ORFCP | |
| 16820 | Protein-tyrosine-phosphatase | |||
| 25930 | Uncharacterized conserved protein | |||
| 25950 | R | Dsp5638ORFCP (22% identity) | UbaSM4ORF25950P | |
| 25960 | Bacteriophage protein gp37 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6950 | Protein of unknown function (DUF1351). | |||
| 6960 | M | M2.Ova1820ORF41880P (23% identity) | M.UbaSM4ORF6960P | |
| 6970 | DNA binding domain, excisionase family | |||
| 7230 | S-adenosylmethionine synthetase | |||
| 7240 | M | M.EsiVORF4860P (85% identity) | M.UbaSM4ORF7240P | |
| 7250 | 292 aa hypothetical protein | |||
| 10000 | Na+-driven multidrug efflux pump | |||
| ??? | M | M.Ccf10ORF12590P (93% identity) | GATC | M.UbaSM4ORFAP |
| 10030 | 142 aa hypothetical protein | |||
| 14900 | Site-specific recombinases, DNA invertase Pin | |||
| ??? | RM | Ccf10ORF23180P (73% identity) | RM1.UbaSM4ORF14940P | |
| ??? | RM | LdeNDORF1048P (6% identity) | RM2.UbaSM4ORF14940P | |
| ??? | RM | Eco57I restriction endonuclease. | RM3.UbaSM4ORF14940P | |
| 14940 | RM | PmeBin58ORFBP (27% identity) | UbaSM4ORF14940P | |
| 14960 | 77 aa hypothetical protein | |||
| 27780 | 117 aa hypothetical protein | |||
| ??? | M | M.PmeBin261ORFEP (76% identity) | GATC | M.UbaSM4ORFDP |
| ??? | DNA modification methylase | |||
| ??? | Transcriptional activator, adenine-specific DNA methyltransferase | |||
| ??? | M | M.Ccf10ORF24910P (93% identity) | CTSAG | M.UbaSM4ORFEP |
| 27820 | 65 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7010 | CobQ/CobB/MinD/ParA nucleotide binding domain. | |||
| ??? | R | PmeBin21ORFBP (46% identity) | UbaSM4ORF7050P | |
| ??? | M | M.PmeBin21ORFBP (32% identity) | M.UbaSM4ORF7050P | |
| 7070 | 138 aa hypothetical protein | |||
| 34960 | B12 binding domain./Pterin binding | |||
| ??? | M | M.PmeBin21ORFBP (30% identity) | M.UbaSM4ORFBP | |
| ??? | R | PmeBin21ORFBP (25% identity) | UbaSM4ORFBP | |
| 35000 | 260 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 24930 | LSU ribosomal protein L25P | |||
| ??? | R | Ccf10MrrP (44% identity) | UbaSM4MrrP | |
| 24980 | 79 aa hypothetical protein | |||
| ??? | R | Ccf10McrCP (100% identity) | UbaSM4McrCP | |
| ??? | R | Ccf10McrBP (87% identity) | UbaSM4McrBP | |
| 29160 | Sugar kinases, ribokinase family | |||