Escherichia coli 2016C04-116 |
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Putative Escherichia coli 2016C04-116 RM systems
Ref: Chen,F.-J. et al. unpublished
REBASE ref # 38580
| Sequence length: | GenBank #: | |
| Chromosome: | 4,820,573 bp | CP131685 |
| plasmid p2016C04-116-1: | 84,251 bp | CP131686 |
| plasmid p2016C04-116-2: | 82,641 bp | CP131687 |
| plasmid p2016C04-116-3: | 78,393 bp | CP131688 |
REBASE acronym: Eco116
Org_num: 77209
All begin Q7631_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8345 | ash family protein | |||
| 8350 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco116ORF8355P |
| 8355 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco116ORF8355P |
| 8360 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco116ORF8355P |
| 8365 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid p2016C04-116-2 | ||||
| 24100 | IS1-like element IS1A family transposase | |||
| 24105 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | Eco116ORF24115P |
| 24110 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco116ORF24115P |
| 24115 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco116ORF24115P |
| 24120 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 570 | DNA-binding transcriptional regulator Fis | |||
| 575 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco116ORF575P |
| 580 | DUF2556 family protein | |||
| 1170 | ribulose-phosphate 3-epimerase | |||
| 1175 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco116DamP |
| 1180 | cell division protein DamX | |||
| 6095 | 97 aa hypothetical protein | |||
| 6100 | R | Ecos19ORF20635P (100% identity) | Eco116ORF6100P | |
| 6105 | response regulator receiver domain | |||
| 6110 | ATP-binding protein | |||
| 6115 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.Eco116ORF6115P |
| 6120 | 174 aa hypothetical protein | |||
| 6400 | helix-turn-helix domain-containing protein | |||
| 6405 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco116ORF6405P |
| 6410 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco116ORF6405P |
| 6415 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco116ORF6405P |
| 6420 | McrC family protein | |||
| 16180 | drug/metabolite exporter YedA | |||
| 16185 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco116DcmP |
| 16190 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco116DcmP |
| 16195 | phosphohydrolase | |||
| 19735 | PerC family transcriptional regulator | |||
| 19740 | M | M.EcoS44ORF14965P (100% identity) | M.Eco116ORF19740P | |
| 19745 | antA/AntB antirepressor family protein | |||
| plasmid p2016C04-116-1 | ||||
| 23455 | 103 aa hypothetical protein | |||
| 23460 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco116ORF23460P |
| 23465 | 73 aa hypothetical protein | |||
| plasmid p2016C04-116-2 | ||||
| 24040 | 73 aa hypothetical protein | |||
| 24045 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco116ORF24045P |
| 24050 | 103 aa hypothetical protein | |||
| plasmid p2016C04-116-3 | ||||
| 24440 | 97 aa hypothetical protein | |||
| 24445 | M | M.Ecos69ORF26765P (99% identity) | M.Eco116ORF24445P | |
| 24450 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16475 | prepilin cleavage protein | |||
| 16480 | R | KpnNCRE61ORF13980P (100% identity) | Eco116ORF16485P | |
| 16485 | M | M.KpnsBRORF3850P (100% identity) | M.Eco116ORF16485P | |
| 16490 | SpnT protein | |||