Deinococcus species VB142 |
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Putative Deinococcus species VB142 RM systems
Ref: Wei,Z. et al. unpublished
REBASE ref # 38553
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,826,664 bp | CP149782 |
| chromosome 2: | 656,160 bp | CP149783 |
| plasmid p1: | 109,449 bp | CP149784 |
| plasmid p2: | 60,422 bp | CP149785 |
| plasmid p3: | 46,247 bp | CP149786 |
REBASE acronym: DspVB142
Org_num: 76862
All begin WDJ50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 9420 | 62 aa hypothetical protein | |||
| 9425 | M | M.TmoRTORF8990P (68% identity) | M.DspVB142ORF9425P | |
| 9430 | S | S.Hbr392ORF18200P (19% identity) | S.DspVB142ORF9425P | |
| 9435 | APC family permease | |||
| plasmid p1 | ||||
| 18165 | 159 aa hypothetical protein | |||
| 18170 | M | M.DspD7000ORF18465P (80% identity) | M.DspVB142ORF18170P | |
| 18175 | Abi family protein | |||
| 18180 | S | S.DwuR12ORF15905P (95% identity) | S1.DspVB142ORF18170P | |
| 18185 | S | S.PaesPA2ORF12950P (39% identity) | S2.DspVB142ORF18170P | |
| 18190 | S | S2.Fnu2594ORF1510P (25% identity) | S3.DspVB142ORF18170P | |
| 18195 | Fic family protein | |||
| 18200 | R | Daq314ORF17925P (67% identity) | DspVB142ORF18170P | |
| 18205 | Tn3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2800 | 510 aa hypothetical protein | |||
| 2805 | M | M.Rso241648ORF3720P (51% identity) | M.DspVB142ORF2805P | |
| 2810 | recombinase family protein | |||
| 4235 | 147 aa hypothetical protein | |||
| 4240 | RM | HspYCN54ORF17065P (12% identity) | DspVB142ORF4240P | |
| 4245 | L-glutamate gamma-semialdehyde dehydrogenase | |||
| 6780 | zinc ribbon domain-containing protein | |||
| 6785 | M | M.Tla21227ORFIP (56% identity) | M.DspVB142ORF6785P | |
| 6790 | S | S.Cfr942ORF22040P (42% identity) | S.DspVB142ORF6785P | |
| 6795 | protein kinase | |||
| 7350 | aminotransferase class I/II-fold pyridoxal | |||
| 7355 | RM | DraRI (76% identity) | DspVB142ORF7355P | |
| 7360 | MBL fold metallo-hydrolase | |||
| 7450 | Uma2 family endonuclease | |||
| 7455 | RM | DprMRPORF291P (64% identity) | DspVB142ORF7455P | |
| 7460 | helix-hairpin-helix domain-containing protein | |||
| 11385 | 370 aa hypothetical protein | |||
| 11390 | M | M.MspT28ORF17785P (48% identity) | M.DspVB142ORF11390P | |
| 11395 | carbamoyl-phosphate synthase large subunit | |||
| chromosome 2 | ||||
| 14660 | IS630 family transposase | |||
| 14665 | R | Ssp171ORF9760P (24% identity) | DspVB142ORF14670P | |
| 14670 | M | M.DraRORFC20P (97% identity) | M.DspVB142ORF14670P | |
| 14675 | IS3 family transposase | |||
| plasmid p2 | ||||
| 18380 | 159 aa hypothetical protein | |||
| 18385 | RM | DspNW56ORFAP (69% identity) | DspVB142ORF18385P | |
| 18390 | KAP family NTPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p3 | ||||
| 18840 | IS1 transposase | |||
| 18845 | M | M.Gba318ORF1943P (59% identity) | M.DspVB142ORF18845P | |
| 18850 | R | PprDORF237P (52% identity) | DspVB142ORF18845P | |
| 18855 | 480 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 13085 | MarR family transcriptional regulator | |||
| 13090 | R | DraRMrrP (65% identity) | DspVB142MrrP | |
| 13095 | AAA family ATPase | |||