Escherichia coli Z1323CEC0010 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli Z1323CEC0010 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
| Sequence length: | GenBank #: | |
| Chromosome: | 5,240,479 bp | CP148445 |
| plasmid pZ1323CEC0010-2: | 107,390 bp | CP148446 |
| plasmid pZ1323CEC0010-4: | 60,769 bp | CP148448 |
| plasmid pZ1323CEC0010-6: | 4,788 bp | CP148450 |
REBASE acronym: EcoCEC0010
Org_num: 76638
All begin WHU12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3355 | IS3 family transposase | |||
| 3360 | M | M.EcoPI6ORF22130P (99% identity) | M.EcoCEC0010ORF3360P | |
| 3365 | S | S.EcoPI6ORF22130P (99% identity) | S.EcoCEC0010ORF3360P | |
| 3370 | DUF4268 domain-containing protein | |||
| 3375 | R | SflSTLE3ORF22785P (100% identity) | EcoCEC0010ORF3360P | |
| 3380 | transposase | |||
| 4415 | transposase | |||
| 4420 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoCEC0010ORF4425P |
| 4425 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoCEC0010ORF4425P |
| 4430 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoCEC0010ORF4425P |
| 4435 | AAA family ATPase | |||
| 22125 | adenine/cytosine-specific restriction | |||
| 22130 | R | Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | EcoCEC0010ORF22135P |
| 22135 | M | M.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | M.EcoCEC0010ORF22135P |
| 22140 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.EcoCEC0010ORF22135P |
| 22145 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1630 | cell division protein DamX | |||
| 1635 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCEC0010DamP |
| 1640 | ribulose-phosphate 3-epimerase | |||
| 2255 | DUF2556 family protein | |||
| 2260 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoCEC0010ORF2260P |
| 2265 | DNA-binding transcriptional regulator Fis | |||
| 3975 | BREX-1 system phosphatase PglZ type A | |||
| 3980 | RM | EcoP19598ORF21290P (100% identity) | EcoCEC0010ORF3980P | |
| 3985 | BREX system P-loop protein BrxC | |||
| 6945 | DUF1382 family protein | |||
| 6950 | M | M.EcoXH992ORF12425P (99% identity) | M.EcoCEC0010ORF6950P | |
| 6955 | PerC family transcriptional regulator | |||
| 9880 | recombination protein NinB | |||
| 9885 | M | M.EcoPEC0001ORF18680P (100% identity) | GATC | M.EcoCEC0010ORF9885P |
| 9890 | NinE family protein | |||
| 10495 | phosphohydrolase | |||
| 10500 | M | M.EcoE2aDcmP (100% identity) | CCWGG | M.EcoCEC0010DcmP |
| 10505 | V | V.EcosPA11DcmP (100% identity) | V.EcoCEC0010DcmP | |
| 10510 | drug/metabolite exporter YedA | |||
| 12845 | IS3 family transposase | |||
| 12850 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoCEC0010ORF12850P | |
| 12855 | 60 aa hypothetical protein | |||
| 17260 | replication endonuclease | |||
| 17265 | M | M.EcoPEC0001ORF980P (100% identity) | GATC | M.EcoCEC0010ORF17265P |
| 17270 | TraR/DksA family transcriptional regulator | |||
| 20965 | recombination protein NinB | |||
| 20970 | M | M.EcoPEC0001ORF18680P (100% identity) | GATC | M.EcoCEC0010ORF20970P |
| 20975 | NinE family protein | |||
| 24350 | RusA family crossover junction | |||
| 24355 | M | M.EcoE2aORF950P (100% identity) | GATC | M.EcoCEC0010ORF24355P |
| 24360 | 28 aa hypothetical protein | |||
| plasmid pZ1323CEC0010-2 | ||||
| 26535 | 103 aa hypothetical protein | |||
| 26540 | M | M.EcoE2aORF26760P (100% identity) | SAY | M.EcoCEC0010ORF26540P |
| 26545 | 73 aa hypothetical protein | |||
| plasmid pZ1323CEC0010-4 | ||||
| 27510 | 103 aa hypothetical protein | |||
| 27515 | M | M.EcoE2aORF26760P (100% identity) | SAY | M.EcoCEC0010ORF27515P |
| 27520 | 73 aa hypothetical protein | |||
| plasmid pZ1323CEC0010-6 | ||||
| 27910 | replication initiation protein | |||
| 27915 | R | EcoeV01ORF23390P (100% identity) | CCNGG | EcoCEC0010ORF27920P |
| 27920 | M | M.SflFF34ORF24420P (100% identity) | CCNGG | M.EcoCEC0010ORF27920P |
| 27925 | 147 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14965 | isocitrate/isopropylmalate family dehydrogenase | |||
| 14970 | R | Ecos15955McrCP (95% identity) | EcoCEC0010McrCP | |
| 14975 | R | Ecos15955McrBP (100% identity) | EcoCEC0010McrBP | |
| 14980 | tail fiber assembly protein | |||
| 22120 | GTPase | |||
| 22125 | R | Ssp28760MrrP (100% identity) | EcoCEC0010MrrP | |
| 22130 | type I restriction-modification system | |||