Escherichia coli GN05064 |
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Putative Escherichia coli GN05064 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
| Sequence length: | GenBank #: | |
| Chromosome: | 5,178,916 bp | CP147555 |
| plasmid unnamed1: | 133,538 bp | CP147554 |
REBASE acronym: Eco5064
Org_num: 76430
All begin WCU49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22025 | adenine/cytosine-specific restriction | |||
| 22030 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco5064ORF22035P |
| 22035 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.Eco5064ORF22035P |
| 22040 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco5064ORF22035P |
| 22045 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3140 | DUF2556 family protein | |||
| 3145 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco5064ORF3145P |
| 3150 | DNA-binding transcriptional regulator Fis | |||
| 6470 | PerC family transcriptional regulator | |||
| 6475 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.Eco5064ORF6475P |
| 6480 | LexA family transcriptional regulator | |||
| 10745 | phosphohydrolase | |||
| 10750 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco5064DcmP |
| 10755 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco5064DcmP |
| 10760 | drug/metabolite exporter YedA | |||
| 12705 | 72 aa hypothetical protein | |||
| 12710 | M | M.Eco79ORF12200BP (100% identity) | M.Eco5064ORF12710BP | |
| 12715 | M | M.Eco79ORF12200AP (100% identity) | M.Eco5064ORF12710AP | |
| 12720 | 153 aa hypothetical protein | |||
| 14605 | 39 aa hypothetical protein | |||
| 14625 | M | M.SboBSORF1444P (100% identity) | A | M.Eco5064ORF14625P |
| 14630 | TrmB family transcriptional regulator | |||
| 16460 | helix-turn-helix domain-containing protein | |||
| 16465 | M | M.KaeCRE8ORF15605P (100% identity) | M.Eco5064ORF16465P | |
| 16470 | 71 aa hypothetical protein | |||
| 22275 | HNH endonuclease | |||
| 22280 | R | Ecoi127aORF4076P (100% identity) | Eco5064ORF22280P | |
| 22285 | peptidase | |||
| 22575 | conjugal transfer protein TraG N-terminal | |||
| 22580 | M | M.EcosS3ORF15775P (100% identity) | M.Eco5064ORF22580P | |
| 22585 | R | EcosS3ORF15775P (100% identity) | Eco5064ORF22580P | |
| 22590 | response regulator receiver domain | |||
| plasmid unnamed1 | ||||
| 700 | 73 aa hypothetical protein | |||
| 705 | M | M.Sfl2142ORF380P (100% identity) | M.Eco5064ORF705P | |
| 710 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6665 | recombinase family protein | |||
| 6670 | R | EspFAAGmrSDP (100% identity) | Eco5064GmrSDP | |
| 6675 | IS5 family transposase | |||
| 22020 | GTPase | |||
| 22025 | R | EcosS1MrrP (100% identity) | Eco5064MrrP | |
| 22030 | type I restriction-modification system | |||
| 22045 | endoribonuclease SymE | |||
| ??? | R | EcoUTGmrSD2P (99% identity) | Eco5064GmrSD2P | |
| 22060 | Rpn family recombination-promoting | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15490 | NinE family protein | |||
| 15495 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco5064ORF15495P |
| 15500 | recombination protein NinB | |||