Rhodococcus species DN22 |
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Putative Rhodococcus species DN22 RM systems
Ref: Zhou,X. et al. Microorganisms 12 (1), 76 (2023)
REBASE ref # 38327
| Sequence length: | GenBank #: | |
| Chromosome: | 6,509,401 bp | CP133326 |
| plasmid p1: | 323,798 bp | CP133327 |
| plasmid p4: | 128,752 bp | CP133330 |
REBASE acronym: RspDN22
Org_num: 75685
All begin RA302_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29030 | 412 aa hypothetical protein | |||
| 29035 | R | RerKB1ORF6217P (99% identity) | RspDN22ORF29045P | |
| 29040 | S | S.RerCERE8ORF31000P (100% identity) | S.RspDN22ORF29045P | |
| 29045 | M | M.RerKB1ORF6217P (100% identity) | M.RspDN22ORF29045P | |
| 29050 | 116 aa hypothetical protein | |||
| 29360 | SprT family zinc-dependent metalloprotease | |||
| 29365 | R | RerCERE8ORF31340P (100% identity) | RspDN22ORF29385P | |
| 29370 | transposase | |||
| 29375 | DDE-type integrase/transposase/recombinase | |||
| 29380 | S | S.RerCERE8ORF31340P (100% identity) | S.RspDN22ORF29385P | |
| 29385 | M | M.RerKB1ORF6295P (100% identity) | M.RspDN22ORF29385P | |
| 29390 | recombinase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 215 | BREX system P-loop protein BrxC | |||
| 220 | RM | RerKB1ORF45P (100% identity) | RspDN22ORF220P | |
| 225 | BREX-1 system phosphatase PglZ type A | |||
| 1655 | DUF998 domain-containing protein | |||
| 1660 | V | V.RspP2ORF14690P (100% identity) | CTCGAG | V.RspDN22ORF1670P |
| 1665 | 291 aa hypothetical protein | |||
| 1670 | M | M.RspP2ORF14690P (100% identity) | CTCGAG | M.RspDN22ORF1670P |
| 1675 | glycolipid-binding domain-containing | |||
| 19090 | 41 aa hypothetical protein | |||
| 19095 | M | M.Rsp1139ORF10115P (100% identity) | M.RspDN22ORF19095P | |
| 19105 | multidrug effflux MFS transporter | |||
| plasmid p1 | ||||
| 30410 | helicase-related protein | |||
| 30415 | M | M.RspYL1ORFFP (99% identity) | M.RspDN22ORF30415P | |
| 30420 | Swt1 family HEPN domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p4 | ||||
| 34230 | DUF4839 domain-containing protein | |||
| 34235 | M | M.Rqi15477ORF31275P (68% identity) | M.RspDN22ORF34235P | |
| 34240 | R | Rqi15477ORF31275P (88% identity) | RspDN22ORF34235P | |
| 34245 | IS21-like element IS1415 family helper ATPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29020 | DEAD/DEAH box helicase | |||
| 29025 | R | RqiVT6GmrSDP (97% identity) | RspDN22GmrSDP | |
| 29030 | 412 aa hypothetical protein | |||