Escherichia coli PS00260.4 |
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Putative Escherichia coli PS00260.4 RM systems
Ref: Mushtaq,A. et al. JAC Antimicrob Resist 6 (1), dlad137 (2023)
REBASE ref # 38215
| Sequence length: | GenBank #: | |
| Chromosome: | 4,772,433 bp | CP127493 |
| plasmid pPS00260_4A.1: | 95,129 bp | CP127494 |
REBASE acronym: Eco2604
Org_num: 75259
All begin QQ475_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10315 | IS3-like element IS600 family transposase | |||
| 10320 | S | S2.EcoMEC0001ORF18360P (100% identity) | S2.Eco2604ORF10345P | |
| 10325 | R | Sbo49812IP (100% identity) | Eco2604ORF10345P | |
| 10330 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 10335 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 10340 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S1.Eco2604ORF10345P |
| 10345 | M | M.EcosE2ORF13465P (100% identity) | M.Eco2604ORF10345P | |
| 10350 | transcription factor | |||
| 18320 | integrase core domain-containing protein | |||
| 18325 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco2604ORF18325P |
| 18330 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco2604ORF18325P |
| 18335 | R | Sen12509ORF5865P (99% identity) | ACAYNNNNCTG | Eco2604ORF18325P |
| 18340 | IS1 family transposase | |||
| plasmid pPS00260_4A.1 | ||||
| 23560 | type II toxin-antitoxin system Phd/YefM family | |||
| 23565 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Eco2604ORF23565P |
| 23570 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco2604ORF23565P |
| 23575 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Eco2604ORF23565P |
| 23580 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15045 | drug/metabolite exporter YedA | |||
| 15050 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco2604DcmP |
| 15055 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco2604DcmP |
| 15060 | phosphohydrolase | |||
| 21520 | DNA-binding transcriptional regulator Fis | |||
| 21525 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco2604ORF21525P |
| 21530 | DUF2556 family protein | |||
| 21975 | 341 aa hypothetical protein | |||
| 21980 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.Eco2604ORF21980P |
| 21985 | 68 aa hypothetical protein | |||
| plasmid pPS00260_4A.1 | ||||
| 23130 | 103 aa hypothetical protein | |||
| 23135 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco2604ORF23135P |
| 23140 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11020 | recombinase family protein | |||
| 11025 | R | EcoteDMcrBP (100% identity) | Eco2604McrBP | |
| 11030 | R | EmaE2C08McrCP (100% identity) | Eco2604McrCP | |
| 11035 | isocitrate/isopropylmalate family dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9135 | TraR/DksA family transcriptional regulator | |||
| 9140 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco2604ORF9140P |
| 9145 | replication endonuclease | |||