Escherichia coli HN68 |
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Putative Escherichia coli HN68 RM systems
Ref: Yang,J. et al. unpublished
REBASE ref # 38057
| Sequence length: | GenBank #: | |
| Chromosome: | 5,062,944 bp | CP141844 |
| plasmid pfosA3: | 77,578 bp | CP141846 |
| plasmid pHN68-3: | 48,743 bp | CP141847 |
REBASE acronym: EcoHN68
Org_num: 73847
All begin VB129_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pfosA3 | ||||
| 25760 | 62 aa hypothetical protein | |||
| 25765 | R | SenS1545ORF24780P (100% identity) | EcoHN68ORF25770P | |
| 25770 | M | M.SenS1545ORF24780P (100% identity) | M.EcoHN68ORF25770P | |
| 25775 | chromosome segregation protein SMC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1710 | cell division protein DamX | |||
| 1715 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoHN68DamP |
| 1720 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoHN68ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 4085 | integrase | |||
| 4090 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoHN68ORF4090P |
| 4095 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoHN68ORF4090P |
| 4100 | IS3 family transposase | |||
| 6250 | 257 aa hypothetical protein | |||
| 6255 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoHN68ORF6255P |
| 6260 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoHN68ORF6255P |
| 6265 | 121 aa hypothetical protein | |||
| 9960 | HD domain-containing protein | |||
| 9965 | M | M.EcoS004DcmP (100% identity) | CCWGG | M.EcoHN68DcmP |
| 9970 | V | V.EcoS004DcmP (100% identity) | V.EcoHN68DcmP | |
| 9975 | drug/metabolite exporter YedA | |||
| 11310 | 401 aa hypothetical protein | |||
| 11315 | M | M.EcoO783ORF220P (100% identity) | M.EcoHN68ORF11315P | |
| 11320 | holin | |||
| 20955 | HNH endonuclease | |||
| 20960 | R | EcoMS851ORF22140P (100% identity) | EcoHN68ORF20960P | |
| 20965 | AAA family ATPase | |||
| plasmid pfosA3 | ||||
| 25935 | 97 aa hypothetical protein | |||
| 25940 | M | M.Xca80ORFEP (100% identity) | M.EcoHN68ORF25940P | |
| 25945 | 73 aa hypothetical protein | |||
| plasmid pHN68-3 | ||||
| 26390 | 92 aa hypothetical protein | |||
| 26400 | M | M.Efe41C23ORF23225P (99% identity) | M.EcoHN68ORF26400P | |
| 26405 | 89 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20960 | HNH endonuclease | |||
| 20965 | R | Ecows53McrBP (100% identity) | EcoHN68McrBP | |
| 20970 | R | Ecows53McrCP (100% identity) | EcoHN68McrCP | |
| 20975 | 128 aa hypothetical protein | |||