Mycoplasmopsis cynos 85384 |
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Putative Mycoplasmopsis cynos 85384 RM systems
Ref: Framst,I. et al. unpublished
REBASE ref # 38004
Complete sequence: 1,031,246 bp
GenBank #: CP141036
REBASE acronym: Mcy85384
Org_num: 73645
All begin RRG58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4320 | amino acid permease | |||
| 4325 | S | S.Mfe21976ORF1860P (62% identity) | S.Mcy85384ORF4325P | |
| 4330 | 54 aa hypothetical protein | |||
| 4365 | 1470 aa hypothetical protein | |||
| 4370 | S | S.Mfe21976ORF220P (100% identity) | S.Mcy85384ORF4370P | |
| 4375 | HU family DNA-binding protein | |||
| 4455 | IS256 family transposase | |||
| 4460 | R | Mfe21976ORF325P (100% identity) | Mcy85384ORF4465P | |
| ??? | M | M.Mfe53109ORF1975P (98% identity) | M.Mcy85384ORF4465P | |
| 4475 | MurR/RpiR family transcriptional regulator | |||
| 595 | site-specific integrase | |||
| 600 | R | Mcy71053ORF3910P (100% identity) | Mcy85384ORF610P | |
| 605 | S | S1.Mca58334ORF4025P (100% identity) | S1.Mcy85384ORF610P | |
| 610 | M | M.Mcy94662ORF3265P (100% identity) | M.Mcy85384ORF610P | |
| 615 | S | S2.Mcy71053ORF3910P (100% identity) | S2.Mcy85384ORF610P | |
| 620 | S | S3.Mca58334ORF4025P (100% identity) | S3.Mcy85384ORF610P | |
| 625 | 101 aa hypothetical protein | |||
| 4770 | 67 aa hypothetical protein | |||
| 4775 | S | S.Mfe99014ORF1240P (93% identity) | S.Mcy85384ORF4775P | |
| 4780 | lysine--tRNA ligase | |||
| 4860 | signal recognition particle protein | |||
| 4865 | S | S.Mfe21976ORF805P (97% identity) | S.Mcy85384ORF4865P | |
| 4870 | ribosome biogenesis GTPase Der | |||
| 5330 | 137 aa hypothetical protein | |||
| 5335 | S | S.Mfe40612ORF1225P (66% identity) | S.Mcy85384ORF5335P | |
| 5340 | energy-coupling factor transporter transmembrane | |||
| 5755 | 2,3-bisphosphoglycerate-independent | |||
| 5760 | S | S.Mfe21976ORF1860P (100% identity) | S.Mcy85384ORF5760P | |
| 5765 | DUF2179 domain-containing protein | |||
| 5915 | 50S ribosomal protein L33 | |||
| 5920 | S | S.Mfe11534ORF2755P (98% identity) | S.Mcy85384ORF5920P | |
| 5925 | cation-translocating P-type ATPase | |||
| 6040 | 5-3 exonuclease H3TH domain-containing | |||
| 6045 | S | S.Mfe99014ORF4255P (96% identity) | S.Mcy85384ORF6045P | |
| 6050 | 558 aa hypothetical protein | |||
| 2835 | 63 aa hypothetical protein | |||
| 2840 | S | S.Mcy87299ORF2145P (100% identity) | S.Mcy85384ORF2840P | |
| 2845 | helix-turn-helix domain-containing protein | |||
| 6935 | SsrA-binding protein | |||
| 6940 | S | S.Mfe21976ORF3075P (100% identity) | S.Mcy85384ORF6940P | |
| 6945 | 23S rRNA (uracil(1939)-C(5))-methyltransferase | |||
| 8110 | DUF31 family protein | |||
| 8115 | S | S.Mfe53109ORF1480P (65% identity) | S.Mcy85384ORF8115P | |
| 8120 | 1191 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4185 | NAD-dependent DNA ligase LigA | |||
| 4190 | RM | Mfe21976ORF35P (100% identity) | Mcy85384ORF4190P | |
| 4195 | restriction endonuclease subunit S | |||
| 200 | hypoxanthine phosphoribosyltransferase | |||
| 205 | M | M.Mcy71053ORF2215P (100% identity) | M.Mcy85384ORF205P | |
| 210 | R | Mcy71053ORF2215P (100% identity) | Mcy85384ORF205P | |
| 215 | amino acid permease | |||
| 4520 | M13 family metallopeptidase | |||
| 4525 | M | M.Mfe71855ORF4250P (98% identity) | M1.Mcy85384ORF4525P | |
| 4530 | R | R1.Mfe64570ORF2985P (100% identity) | R1.Mcy85384ORF4525P | |
| 4535 | ABC transporter ATP-binding protein/permease | |||
| 4540 | ABC transporter ATP-binding protein | |||
| 4545 | 622 aa hypothetical protein | |||
| 4550 | 50 aa hypothetical protein | |||
| 4555 | R | R2.Mfe21976ORF410P (100% identity) | R2.Mcy85384ORF4525P | |
| 4560 | M | M2.Mfe21976ORF410P (100% identity) | M2.Mcy85384ORF4525P | |
| 4565 | transposase | |||
| 4810 | NUDIX domain-containing protein | |||
| 4820 | M | M.Mfe21976ORF755AP (100% identity) | M.Mcy85384ORF4820AP | |
| 4825 | M | M.Mfe35610ORF3905BP (71% identity) | M.Mcy85384ORF4820BP | |
| 4830 | R | Mfe21976ORF755P (100% identity) | Mcy85384ORF4820P | |
| 4835 | 71 aa hypothetical protein | |||
| 3960 | elongation factor G | |||
| 4915 | M | M.Mfe99751ORF1075P (99% identity) | M.Mcy85384ORF4915P | |
| 4920 | R | MfeCOORF355P (98% identity) | Mcy85384ORF4915P | |
| 4925 | 50S ribosomal protein L11 | |||
| 5165 | bifunctional DNA-formamidopyrimidine | |||
| ??? | M | M1.Mfe21976ORF1150P (100% identity) | M1.Mcy85384ORF5170P | |
| 5175 | 66 aa hypothetical protein | |||
| 5180 | 45 aa hypothetical protein | |||
| 5185 | Sua5/YciO/YrdC/YwlC family protein | |||
| 5190 | R | Mfe21976ORF1150P (100% identity) | Mcy85384ORF5170P | |
| 5195 | M | M.Mfe99751ORF765P (99% identity) | M2.Mcy85384ORF5170P | |
| 3755 | elongation factor Tu | |||
| 5230 | DnaJ C-terminal domain-containing protein | |||
| 5240 | M | M.Mfe79979ORF1015P (100% identity) | M.Mcy85384ORF5240P | |
| 5245 | R | MfeCOORF705P (100% identity) | Mcy85384ORF5240P | |
| 5250 | DNA polymerase III subunit gamma/tau | |||
| 6235 | pseudouridine synthase | |||
| ??? | M | M.Mfe11534ORF4680P (99% identity) | M.Mcy85384ORF6240P | |
| 6250 | R | M.Mfe99751ORF2425P (37% identity) | Mcy85384ORF6240AP | |
| 6255 | R | M.MfeCOORF1750P (7% identity) | Mcy85384ORF6240BP | |
| 6260 | 137 aa hypothetical protein | |||
| 2325 | 302 aa hypothetical protein | |||
| 2330 | M | M1.Mca58334ORF5430P (100% identity) | M1.Mcy85384ORF2330P | |
| 2335 | M | M2.Mcy94662ORF2510P (100% identity) | M2.Mcy85384ORF2330P | |
| 2340 | HNH endonuclease | |||
| 6685 | HNH endonuclease | |||
| ??? | M | M.Mfe21976ORF2820P (100% identity) | M.Mcy85384ORF6690P | |
| 6710 | M42 family metallopeptidase | |||
| 3920 | DNA topoisomerase IV subunit A | |||
| 3925 | RM | Mcy71053ORF1470P (100% identity) | Mcy85384ORF3925P | |
| 3930 | energy-coupling factor transporter transmembrane | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6345 | 23S rRNA | |||
| ??? | M | M.Mfe21976ORF2480P (100% identity) | M.Mcy85384ORF6350P | |
| 6365 | R | Mfe21976ORF2480P (100% identity) | Mcy85384ORF6350P | |
| 6370 | 302 aa hypothetical protein | |||
| 6785 | transposase | |||
| ??? | M | M1.Mfe64570ORF1440P (98% identity) | M1.Mcy85384ORF6790P | |
| 6800 | 100 aa hypothetical protein | |||
| ??? | M | M1.Mfe99751ORF2065P (98% identity) | M2.Mcy85384ORF6790P | |
| 6815 | R | Mfe53109ORF3465P (99% identity) | Mcy85384ORF6790P | |
| 6820 | GTPase ObgE | |||
| 7710 | HAD-IIB family hydrolase | |||
| 7715 | M | M.Mfe21976ORF3900AP (100% identity) | M1.Mcy85384ORF7715P | |
| 7720 | M | M.Mfe21976ORF3900BP (100% identity) | M2.Mcy85384ORF7715P | |
| 7725 | R | Mfe21976ORF3900P (100% identity) | Mcy85384ORF7715P | |
| 7730 | 104 aa hypothetical protein | |||
| 3840 | FAD-dependent oxidoreductase | |||
| 3845 | R | Mcy71053ORF1385P (100% identity) | Mcy85384ORF3850P | |
| 3850 | M | M.Mca58334ORF6780P (100% identity) | M.Mcy85384ORF3850P | |
| 3855 | KilA-N domain-containing protein | |||
| 3870 | IS30 family transposase | |||
| 3875 | R | Mcy71053ORF1415P (100% identity) | Mcy85384ORF3880P | |
| 3880 | M | M.Mcy71053ORF1415BP (100% identity) | M.Mcy85384ORF3880BP | |
| 3885 | M | M.Mcy71053ORF1415AP (100% identity) | M.Mcy85384ORF3880AP | |
| 3890 | 70 aa hypothetical protein | |||
| 3900 | IS30 family transposase | |||
| 3905 | R | Mcy71053ORF1450P (100% identity) | Mcy85384ORF3910P | |
| 3910 | M | M.Mca58334ORF6825P (100% identity) | M.Mcy85384ORF3910P | |
| 3915 | lysine--tRNA ligase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6910 | DNA topoisomerase subunit B | |||
| 6915 | R | Mfe21976GmrSDP (100% identity) | Mcy85384GmrSDP | |
| 6920 | IS3 family transposase | |||