Helicobacter pylori F16 |
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Putative Helicobacter pylori F16 RM systems
Ref: Furuta,Y. et al. Proc. Natl. Acad. Sci. U.S.A., DOI, DOI:10.1073/pnas.1012579108 (2011)
REBASE ref # 12381
Complete sequence: 1,575,399 bp
GenBank #: AP011940
REBASE acronym: HpyF
Org_num: 6600
All begin HPF16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 440 | polyphosphate kinase | |||
| 441 | S | S.HpyPF16ORF2205P (100% identity) | S.HpyFORF442P | |
| 442 | M | M.HpyPF16ORF2205P (100% identity) | M.HpyFORF442P | |
| ??? | R | HpyPF16ORF2205P (100% identity) | HpyFORF442P | |
| 445 | 631 aa hypothetical protein | |||
| 511 | 228 aa hypothetical protein | |||
| 512 | M | M.HpyPF16XV (100% identity) | CTANNNNNNNNTTG | M.HpyFXIV |
| 513 | S | S.HpyPF16XV (100% identity) | CTANNNNNNNNTTG | S.HpyFXIV |
| ??? | R | HpyPF16XVP (100% identity) | CTANNNNNNNNTTG | HpyFXIVP |
| 516 | thiamine phosphate pyrophosphorylase | |||
| 571 | cadmium-transporting ATPase | |||
| 572 | S | S.HpyPF16XIV (100% identity) | VTAYNNNNNNNTTG | S.HpyFXV |
| 573 | outer membrane protein HofF | |||
| 1427 | FAD-dependent thymidylate synthase | |||
| 1428 | S | S.HpyPF16ORF7200P (97% identity) | S.HpyFORF1430P | |
| 1429 | 259 aa hypothetical protein | |||
| 1430 | M | M.HpyPF16ORF7200P (100% identity) | M.HpyFORF1430P | |
| 1431 | R | HpyPF16ORF7200P (100% identity) | HpyFORF1430P | |
| 1432 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 44 | nicotinate-nucleotide pyrophosphorylase | |||
| 45 | RM | HpyPF16ORF260P (69% identity) | HpyFORF45P | |
| 47 | adenine specific DNA methyltransferase | |||
| 46 | adenine specific DNA methyltransferase | |||
| 47 | M | M.HpyPF16VII (100% identity) | GANTC | M.HpyFIV |
| 48 | R | HpyPF16VIIP (100% identity) | GANTC | HpyFIVP |
| 49 | carboxyl-terminal protease | |||
| 56 | 242 aa hypothetical protein | |||
| 57 | M | M1.HpyPF16ORF315P (89% identity) | CCTC | M1.HpyFORF57P |
| ??? | M | M2.HpyPF16ORF315P (100% identity) | CCTC | M2.HpyFORF57P |
| 59 | M | cytosine specific DNA methyltransferase | M3.HpyFORF57P | |
| 60 | proline permease | |||
| 103 | malonyl coenzyme A-acyl carrier protein | |||
| 104 | R | HpyPF16VIIIP (100% identity) | GATC | HpyFIIIP |
| 105 | M | M.HpyPF16VIII (100% identity) | GATC | M.HpyFIII |
| 106 | alpha-1,2-fucosyltransferase | |||
| 266 | exodeoxyribonuclease VII large subunit | |||
| 267 | M | M.HpyPF16XI (100% identity) | TCGA | M.HpyFII |
| 268 | 204 aa hypothetical protein | |||
| 268 | 204 aa hypothetical protein | |||
| 269 | R | HpyPF16IVP (100% identity) | CCGG | HpyFVP |
| 270 | M | M.HpyPF16IV (100% identity) | CCGG | M.HpyFV |
| 271 | ATP-dependent protease binding subunit | |||
| 318 | 293 aa hypothetical protein | |||
| 319 | R | HpyPF16VIP (100% identity) | CTNAG | HpyFXIP |
| 320 | M | M.HpyPF16VI (100% identity) | CTNAG | M.HpyFXI |
| 321 | 125 aa hypothetical protein | |||
| 458 | outer membrane protein HopK | |||
| 459 | M | M.HpyPF16II (100% identity) | ATTAAT | M.HpyFVII |
| 460 | Type II adenine specific methyltransferase | |||
| 461 | 599 aa hypothetical protein | |||
| ??? | M | M.HpyPF16ORF2305P (95% identity) | ACNGT | M.HpyFORF462P |
| 464 | IS605 transposase | |||
| 478 | 103 aa hypothetical protein | |||
| 479 | R | Type II restriction endonuclease | ACNGT | HpyFORF479P |
| 480 | catalase-like protein | |||
| 675 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 676 | RM | HpyPF16ORF3345P (62% identity) | HpyFORF676P | |
| 677 | Type IIG restriction-modification enzyme | |||
| 676 | Type IIG restriction-modification enzyme | |||
| 677 | RM | HpyPF16ORF3345P (37% identity) | HpyFORF677P | |
| 678 | outer membrane protein HorF | |||
| 698 | 270 aa hypothetical protein | |||
| 699 | M | M.Hpyfe56ORF3730P (100% identity) | CCNNGG | M.HpyFX |
| 700 | R | Hpyfe33ORF3810P (100% identity) | CCNNGG | HpyFXP |
| 701 | 119 aa hypothetical protein | |||
| 849 | outer membrane protein | |||
| 850 | R | HpyPF16IXP (100% identity) | GTAC | HpyFXIIP |
| 851 | M | M.HpyF226ORFRP (99% identity) | GTAC | M.HpyFXII |
| 852 | DNA gyrase subunit B | |||
| 889 | flagellar hook protein FlgE | |||
| 890 | R | HpyPF16XP (100% identity) | GTNNAC | HpyFIXP |
| 891 | M | M.HpyPF16X (100% identity) | GTNNAC | M.HpyFIX |
| 892 | rep helicase, single-stranded DNA-dependent | |||
| 1027 | biotin carboxylase | |||
| 1028 | M | M.HpyPF16XII (100% identity) | TCNNGA | M.HpyFVIII |
| ??? | R | HpyPF16XIIP (100% identity) | TCNNGA | HpyFVIIIP |
| 1031 | 214 aa hypothetical protein | |||
| 1062 | 144 aa hypothetical protein | |||
| 1063 | M | M.HpyPF16XVI (100% identity) | GCGC | M.HpyFORF1063P |
| 1064 | flgM protein | |||
| 1144 | 222 aa hypothetical protein | |||
| 1145 | M | M.HpyPF16I (100% identity) | CATG | M.HpyFI |
| ??? | R | HpyPF16IP (100% identity) | CATG | HpyFIP |
| 1146 | serine acetyltransferase | |||
| 1366 | DNA polymerase I | |||
| ??? | S | S.HpyPF16ORF6895P (71% identity) | S.HpyFORF1367P | |
| 1369 | RM | HpyPF16ORF6895P (100% identity) | HpyFORF1367P | |
| 1370 | 191 aa hypothetical protein | |||
| 1395 | 355 aa hypothetical protein | |||
| 1396 | M | M1.HpyU123V (100% identity) | CCATC | M2.HpyFXIII |
| 1397 | M | M2.HpyPF16III (100% identity) | CCATC | M1.HpyFXIII |
| ??? | R | HpyPF16IIIP (100% identity) | CCATC | HpyFXIIIP |
| 1401 | outer membrane protein | |||
| 1414 | transcription elongation factor NusA | |||
| 1415 | RM | HpyPF16XIX (100% identity) | HpyFORF1415P | |
| 1416 | Type III restriction enzyme | |||
| 1446 | 67 aa hypothetical protein | |||
| 1447 | M | M.HpyTW01III (100% identity) | TGCA | M.HpyFVI |
| 1448 | R | HpyPF16XIIIP (100% identity) | TGCA | HpyFVIP |
| 1449 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 31 | rod shape-determining protein | |||
| 32 | R | HpyPF16XVIIP (100% identity) | HpyFORF33P | |
| 33 | M | M.HpyPF16XVII (100% identity) | M.HpyFORF33P | |
| 34 | transcriptional regulator | |||
| 1295 | endonuclease, split and separated by | |||
| 1296 | M | M.HpyPF16ORF6530P (100% identity) | M.HpyFORF1296P | |
| 1297 | R | HpyPF16ORF6530P (92% identity) | HpyFORF1296P | |
| 1298 | biotin synthase | |||
| 1415 | Type IIG restriction-modification enzyme | |||
| 1416 | R | HpyPF16ORF7130P (100% identity) | HpyFORF1417P | |
| 1417 | M | M.HpyPF16ORF7130P (100% identity) | M.HpyFORF1417P | |
| 1418 | DNA recombinase | |||