Vibrio parahaemolyticus TW01 |
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Putative Vibrio parahaemolyticus TW01 RM systems
Ref: Vereecke,N. et al. unpublished
REBASE ref # 37852
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,498,232 bp | CP133900 |
| chromosome 2: | 1,871,912 bp | CP133901 |
| plasmid pVPTW013: | 69,147 bp | CP133904 |
REBASE acronym: VpaTW01
Org_num: 72967
All begin RHS39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3225 | AAA family ATPase | |||
| 3230 | S | S.VpaS2ORFBP (100% identity) | S.VpaTW01ORF3235P | |
| 3235 | M | M.VpaS2ORFBP (100% identity) | M.VpaTW01ORF3235P | |
| 3240 | 132 aa hypothetical protein | |||
| 3245 | 49 aa hypothetical protein | |||
| 3250 | elongation factor Ts | |||
| 3255 | site-specific DNA-methyltransferase | |||
| 3260 | R | VpaS2ORFBP (95% identity) | VpaTW01ORF3235P | |
| 3265 | 806 aa hypothetical protein | |||
| 5920 | 263 aa hypothetical protein | |||
| 5925 | M | M.VpaS2ORFJP (100% identity) | M.VpaTW01ORF5925P | |
| 5930 | S | S.VpaS2ORFJP (100% identity) | S1.VpaTW01ORF5925P | |
| 5935 | S | S2.VspgvcORFCP (98% identity) | S2.VpaTW01ORF5925P | |
| 5940 | R | VpaS2ORFJP (100% identity) | VpaTW01ORF5925P | |
| 5945 | 145 aa hypothetical protein | |||
| chromosome 2 | ||||
| 21785 | 511 aa hypothetical protein | |||
| 21790 | S | S.VpaS2ORFFP (100% identity) | S.VpaTW01ORF21795P | |
| 21795 | M | M.VpaS2ORFFP (100% identity) | M.VpaTW01ORF21795P | |
| 21800 | R | VpaS2ORFFP (100% identity) | VpaTW01ORF21795P | |
| 21805 | sigma-54 dependent transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3250 | elongation factor Ts | |||
| 3255 | M | M.VpaS2ORFCP (94% identity) | M.VpaTW01ORF3255P | |
| 3260 | DEAD/DEAH box helicase family protein | |||
| 9045 | nucleotidyltransferase family protein | |||
| 9050 | R | Vpa5ORFAP (85% identity) | VpaTW01ORF9050P | |
| 9055 | 217 aa hypothetical protein | |||
| 14545 | ribulose-phosphate 3-epimerase | |||
| 14550 | M | M.VphVPD14DamP (100% identity) | GATC | M.VpaTW01DamP |
| 14555 | AAA family ATPase | |||
| plasmid pVPTW013 | ||||
| 25920 | integrase | |||
| 25925 | M | M.VpaVP17ORF25320P (100% identity) | M.VpaTW01ORF25925P | |
| 25930 | IS5-like element ISVa2 family transposase | |||