Prevotella hominis HDD12 |
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Putative Prevotella hominis HDD12 RM systems
Ref: Lesker,T.R. unpublished
REBASE ref # 37820
| Sequence length: | GenBank #: | |
| Chromosome: | 3,801,778 bp | CP137559 |
| plasmid unnamed: | 317,413 bp | CP137560 |
REBASE acronym: PhoHDD12
Org_num: 72784
All begin KUA50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10600 | helix-turn-helix transcriptional regulator | |||
| 10605 | M | M.BfrQ1F2ORF9865P (84% identity) | M.PhoHDD12ORF10605P | |
| 10610 | S | S.TprZAS2ORF3692P (35% identity) | S.PhoHDD12ORF10605P | |
| 10615 | MobV family relaxase | |||
| plasmid unnamed | ||||
| 16030 | tyrosine-type recombinase/integrase | |||
| 16035 | C | C.BthC24ORF5280P (100% identity) | C.PhoHDD12ORF16045P | |
| 16040 | R | Bun8864ORF3591P (99% identity) | PhoHDD12ORF16045P | |
| 16045 | M | M.Bun8864ORF3591P (100% identity) | M.PhoHDD12ORF16045P | |
| 16050 | S | S1.Bov299ORF13225P (100% identity) | S1.PhoHDD12ORF16045P | |
| 16055 | 168 aa hypothetical protein | |||
| 16060 | S | S2.ScoH2383ORFCP (96% identity) | S2.PhoHDD12ORF16045P | |
| 16065 | S | S3.BthC24ORF5280P (93% identity) | S3.PhoHDD12ORF16045P | |
| 16070 | S | S3.ScoH2497ORFDP (73% identity) | S4.PhoHDD12ORF16045P | |
| 16075 | S | S5.Bca100ORF2515P (61% identity) | S5.PhoHDD12ORF16045P | |
| 16080 | tyrosine-type recombinase/integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5355 | 318 aa hypothetical protein | |||
| 5360 | M | M.PspE93ORF11770P (69% identity) | M.PhoHDD12ORF5360P | |
| 5365 | R | Pme1567ORF5075P (77% identity) | PhoHDD12ORF5360P | |
| 5370 | C69 family dipeptidase | |||
| 5895 | AAA family ATPase | |||
| 5900 | R | R1.ScoH2477ORFAP (88% identity) | R1.PhoHDD12ORF5910P | |
| 5905 | R | R2.ScoH2477ORFAP (95% identity) | R2.PhoHDD12ORF5910P | |
| 5910 | M | M.ScoH2477ORFAP (92% identity) | M.PhoHDD12ORF5910P | |
| 5915 | 300 aa hypothetical protein | |||
| 7000 | 324 aa hypothetical protein | |||
| 7005 | V | V.Pco18205ORF7250P (81% identity) | V.PhoHDD12ORF7035P | |
| 7010 | helix-turn-helix domain-containing protein | |||
| 7015 | 73 aa hypothetical protein | |||
| 7020 | DUF6575 domain-containing protein | |||
| 7025 | restriction endonuclease | |||
| 7030 | R | Pbi727ORF8090P (38% identity) | PhoHDD12ORF7035P | |
| 7035 | M | M2.BbaF22ORFBP (58% identity) | M1.PhoHDD12ORF7035P | |
| 7040 | M | M.FspI32ORFAP (52% identity) | M2.PhoHDD12ORF7035P | |
| 7045 | nucleotidyltransferase family protein | |||
| 9220 | S24 family peptidase | |||
| 9225 | M | M.Bxy111ORF4835P (84% identity) | M.PhoHDD12ORF9225P | |
| 9230 | AIPR family protein | |||
| 9715 | DNA binding domain-containing protein | |||
| 9720 | S | S.Bvi23226ORF17400P (45% identity) | S.PhoHDD12ORF9725P | |
| 9725 | M | M.PcoInI (96% identity) | GAGNNNTAC | M.PhoHDD12ORF9725P |
| 9730 | helix-turn-helix transcriptional regulator | |||
| 12010 | DUF6078 family protein | |||
| 12015 | RM | Meq11012ORF2537P (40% identity) | PhoHDD12ORF12015P | |
| 12020 | ATP-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2060 | SNF2-related protein | |||
| 2065 | M | M.PcoInORF9625P (77% identity) | M.PhoHDD12ORF2065P | |
| 2070 | R | PcoInORF9625P (98% identity) | PhoHDD12ORF2065P | |
| 2075 | 39 aa hypothetical protein | |||
| 12950 | 238 aa hypothetical protein | |||
| 12955 | R | ScoH2383ORFDP (97% identity) | PhoHDD12ORF12960P | |
| 12960 | M | M.Bce120ORF1818P (47% identity) | M.PhoHDD12ORF12960P | |
| 12965 | HepT-like ribonuclease domain-containing | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7055 | (deoxy)nucleoside triphosphate | |||
| 7060 | R | ScoHDE06ORF12230P (92% identity) | PhoHDD12ORF7060P | |
| 7065 | protein tyrosine phosphatase | |||