Escherichia coli PSS-16 |
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Putative Escherichia coli PSS-16 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,532,125 bp | AP027713 |
| plasmid pPSS-16_1: | 114,948 bp | AP027714 |
REBASE acronym: EcoPSS16
Org_num: 72667
All begin VEE25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20340 | 248 aa hypothetical protein | |||
| 20350 | M | M.Eco34C12ORF11440P (99% identity) | M.EcoPSS16ORF20350P | |
| 20360 | S | S.KquPF42ORF12975P (100% identity) | S.EcoPSS16ORF20350P | |
| 20370 | 227 aa hypothetical protein | |||
| 20380 | R | KquPF42ORF12975P (99% identity) | EcoPSS16ORF20350P | |
| 20390 | metal-dependent hydrolase | |||
| 36560 | restriction methylase | |||
| 36570 | M | M.EcoMB20ORF19675P (79% identity) | M.EcoPSS16ORF36570P | |
| 36580 | transposase InsE for insertion sequence IS3D | |||
| 36590 | transposase | |||
| 36600 | S | S1.Eco64036ORF20160P (98% identity) | S.EcoPSS16ORF36570P | |
| 36610 | R | EcoYPE3ORF20380P (99% identity) | EcoPSS16ORF36570P | |
| 36620 | oxidoreductase | |||
| plasmid pPSS-16_1 | ||||
| 42480 | 73 aa hypothetical protein | |||
| 42490 | M | M.Efe7LTORF43470P (94% identity) | M.EcoPSS16ORF42490P | |
| 42500 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3060 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSS16DamP |
| 3080 | ribulose-phosphate 3-epimerase | |||
| 4230 | acrEF/envCD operon repressor | |||
| 4240 | M | M.Eco2CCORF22560P (100% identity) | ATGCAT | M.EcoPSS16ORF4240P |
| 4250 | DNA-binding protein Fis | |||
| 13360 | 64 aa hypothetical protein | |||
| 13370 | M | M.EcoSTEC413ORF8565P (100% identity) | M.EcoPSS16ORF13370P | |
| 13380 | phage holin, lambda family protein | |||
| 24930 | multidrug transporter | |||
| 24940 | V | V.Eco2CCDcmP (100% identity) | V.EcoPSS16DcmP | |
| 24950 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoPSS16DcmP |
| 24960 | 231 aa hypothetical protein | |||
| 33140 | exonuclease | |||
| 33150 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoPSS16ORF33150P |
| 33160 | 71 aa hypothetical protein | |||
| 36520 | 216 aa hypothetical protein | |||
| 36530 | R | SflFF17ORF19275P (100% identity) | EcoPSS16ORF36530P | |
| 36540 | mcrBC 5-methylcytosine restriction system | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 36530 | restriction endonuclease | |||
| 36540 | R | EcoYPE3McrCP (100% identity) | EcoPSS16McrCP | |
| 36550 | R | EcoYPE3McrBP (100% identity) | EcoPSS16McrBP | |
| 36560 | restriction methylase | |||