Escherichia coli PSJ-16 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli PSJ-16 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,630,888 bp | AP027632 |
| plasmid pPSJ-16_1: | 200,003 bp | AP027633 |
REBASE acronym: EcoPSJ16
Org_num: 72651
All begin VEE44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 37270 | restriction methylase | |||
| 37280 | M | M.SsoSE61ORF6540P (53% identity) | M.EcoPSJ16ORF37280P | |
| 37290 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3420 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPSJ16DamP |
| 3440 | ribulose-phosphate 3-epimerase | |||
| 4590 | acrEF/envCD operon repressor | |||
| 4600 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoPSJ16ORF4600P |
| 4610 | DNA-binding protein Fis | |||
| 17420 | phosphohydrolase | |||
| 17430 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoPSJ16DcmP |
| 17440 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoPSJ16DcmP |
| 17450 | drug/metabolite exporter YedA | |||
| 37230 | 9-O-acetyl-N-acetylneuraminic acid | |||
| 37240 | R | SflSTLE4ORF19250P (100% identity) | EcoPSJ16ORF37240P | |
| 37250 | mcrBC 5-methylcytosine restriction system | |||
| plasmid pPSJ-16_1 | ||||
| 43820 | 55 aa hypothetical protein | |||
| 43830 | M | M.StyCORF187P (100% identity) | CCWGG | M.EcoPSJ16ORF43830P |
| 43840 | nuclease | |||
| 45100 | DNA-binding protein | |||
| 45110 | M | M.Ype21801ORF197P (100% identity) | M.EcoPSJ16ORF45110P | |
| 45120 | 273 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 37240 | restriction endonuclease | |||
| 37250 | R | SflSTLE4McrCP (100% identity) | EcoPSJ16McrCP | |
| 37260 | R | SflSTLE4McrBP (99% identity) | EcoPSJ16McrBP | |
| 37270 | restriction methylase | |||
| 37700 | 97 aa hypothetical protein | |||
| 37710 | R | EasL1MrrP (99% identity) | EcoPSJ16MrrP | |
| 37720 | type I restriction endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28410 | replication endonuclease from | |||
| 28420 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoPSJ16ORF28420P |
| 28430 | 75 aa hypothetical protein | |||